Musa acuminata (dessert banana): 135624393
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Entry
135624393 CDS
T03447
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135624393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
135624393
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135624393
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135624393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
135624393
NCBI-ProteinID:
XP_064984003
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All DBs
Position
BXJ2-10:complement(19417563..19426464)
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AA seq
679 aa
AA seq
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MSTTSGIESSLNTYHKTIMSGLLNSTLNGSASNLTDSTGRPYTTSFSGQSATMPGFHNSS
GLQGLHNIHGSFNLPNMPGSLVSRNAAIGGVPSGGVPQPGGSIPSGRFASNNLLVALSQM
SHGSGVTNRGGINVVGNHAFSSNMSGVGGSITGVSSSSATGNRSAVPGLGVSPVLGNVGP
RLASTMGNIVGGGNMGRSISSGGLSVPGLSSRVNLGANSGSGSLSVQGSNRLISGMLQQA
APQMIGMLGNSYPISGGPLSQIQGANNPLSSMGMLNDVNAADSSPFDMNDFPQLNARPSS
AGGPQGQLGATRKQGVGVSSIVQQNQEFSIQNEDFPALPGLKGSSSDFSVDLHQKEQLHE
NISTMQPQHLPLARSAGFSLGGTYPPTRQQQQQHATAASSGGLPFTPGNNVDLRLHGSDF
FPSSHGNYHSQIQNSGAPSIGLRPLNSPNPVSGLGVYEQLIQQYQHPQSQSQFRLQQISD
VSQSYRDQSIKSVQGSLLAPDRFGLQGLLSVIRMNDPDLTSLALGIDLTTLGLNLNSSDN
LHKTFGSPWSDEPAKGEPEFCIPTCYHAKSSPILHQGYLSKLQLSTLFYIFYSMPKDEDQ
LYAASELYARGWFYHKEHQLWFVRVPNLEPLVKTHAYERGSYHCFDPNTWGTILKENFVL
HYEAVEKKPILPSDPSDRP
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgagcactacgtctggaattgaatcctccttgaacacttatcacaaaactataatgtct
gggctgttaaattcgacacttaatggttcagcatcaaatctcactgactcaactggccga
ccctacaccacatcattttccggccagtctgctacaatgcctggatttcataactccagt
ggtcttcaagggctgcataacattcacggaagcttcaacctgccaaacatgccgggttca
cttgtatcaagaaatgcagcaatcggtggtgttccatcaggtggtgttccacaaccaggg
ggaagcattcctagcggacggtttgcatccaacaatcttttggttgcattgtctcagatg
tctcatggctctggtgtgacaaatagagggggtatcaatgttgttggaaatcatgctttt
agcagtaacatgagtggagttggtgggtcaataactggtgtctcctcaagttctgccact
ggcaatcgtagtgcggttcctggtttgggagtttctccagttttgggtaatgtaggccct
agacttgcaagcaccatgggaaacattgttggtggtggtaatatgggaagaagcattagc
tctggaggattatcagttcctggactatcttcacgtgtaaacttgggtgctaatagtgga
tcagggagccttagtgtacaaggatctaatagactgatcagtggcatgcttcaacaagca
gcaccacaaatgattggtatgcttgggaattcttatcctatatctggaggacctctatct
caaatccaaggtgcgaataaccccttaagctctatgggaatgttgaatgatgtcaatgct
gccgacagttctccttttgatatgaatgattttcctcaattaaatgcacgaccaagttca
gctggaggcccacaaggacaattgggtgcaacacgtaaacaaggggttggtgttagctcc
attgtccaacaaaatcaggaatttagcatacaaaatgaagattttccagctttaccagga
ttaaaaggcagtagctcagacttttctgtggatttgcatcagaaagaacaactccatgaa
aatatttccacaatgcagccacaacatctacctctggcaagatctgctggatttagctta
ggaggaacttacccacctacccgacagcaacagcagcagcatgccactgcagctagtagt
ggtgggcttccttttacacctgggaacaatgtagatctccggttacatggttctgatttt
tttccatcctctcatggaaactaccattcacagattcaaaacagtggagcccctagcatt
ggcttgagacccttaaactctccaaatccagtttctggtctgggagtgtatgagcagctc
attcagcaatatcaacatccacaaagtcaatcgcaatttcgactgcaacagatatctgat
gttagtcagtcgtatagggatcagagcataaagtctgttcagggatcactgctagctcct
gatcggtttggcttgcagggtttgttgagtgttattaggatgaatgatccagatctaaca
tctcttgctttgggaattgatttaactacgttgggtttgaacttaaactcttcggataat
cttcataaaacatttggttctccatggtctgatgagcctgccaagggggagcctgaattt
tgcattccgacttgctatcatgccaaatcatcaccaattctacatcaaggttatttgtca
aaattacagctatcaaccctgttttacatcttttatagtatgccaaaggatgaagatcaa
ctctatgcggcctctgaactatatgcgcgtggatggttctaccacaaagagcatcagtta
tggttcgtgagagttccaaatttggagcctcttgttaagacacatgcatatgaaagagga
tcgtaccactgtttcgatccaaacacatggggaacaattctaaaggagaactttgttttg
cattacgaggcagtggagaagaaaccaatacttccttctgatccttctgatcgcccttag
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