Musa acuminata (dessert banana): 135626457
Help
Entry
135626457 CDS
T03447
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
mus
Musa acuminata (dessert banana)
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mus03021
]
135626457
03036 Chromosome and associated proteins [BR:
mus03036
]
135626457
Transcription machinery [BR:
mus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
135626457
Chromosome and associated proteins [BR:
mus03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
135626457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
Tex_central_region
HHH_9
Tex_N
HHH_3
Motif
Other DBs
NCBI-GeneID:
135626457
NCBI-ProteinID:
XP_064987838
LinkDB
All DBs
Position
BXJ2-11:complement(25707934..25721755)
Genome browser
AA seq
1728 aa
AA seq
DB search
MGGRAVVSDEEDEVEEDEEERAMEQDADDVGDGGNDDEEEEEEEGQDEYEQDGFIVDDVE
EEEAEEEEEEEKQESDEERHRKRKKKRRDSEKNYVLDEDDYELLQDNNITGFRRPQPSSK
FKRLKKAGRDNEVERSGFSDDEEFDRDSRGGRTAEEKLKRSLFGDDEVVPLEDIAEEEEQ
PEEEEEADIIGEEDEMADFIVDEEDVDETGAVVRKKKPKKKMSRQAPGVSSSALQEAHEI
FGDVDELLMLRKQGLAAVSADGSWSEKRLEDEFEPFILSEKYMTPKDDIIRETDVPERIQ
LSEDKTGSPPTDDKSIEDESTWIYSQLTSGGISPLVGYDQIVKEINKEEIGNVLTMMHVQ
KLDIPFISMYRKELCHSLLKDPDANMADIEETPKMKWHKVLWAVQTLDRKWLLLQKRKSA
LHSYYNKRFEEEARRIDNETRLALNQQLFKSITEALKDARSEREVDDIDAKFNLHFPPGE
VDTEDVQFKRPKRKSLYSSFHKAGLWEVANKFGANSEQFGLLLSLEKISDEFEDAKETPE
EIAANFTCALFETPQDVLKGARHMAAVEIGCEPNVRRHVRSIFMEKAVVSTSPTPEGNMA
IDSYHQLAGVKWLRNKPLSEFVDAQWLLIQKGEEEKLLKVTIKLPEDIQKKLLSDASEYY
LSERVSRSAQLWNEQRKMILDDSFLTLILPSMAKEAQSLLTARAKSWLLMEYGRQLWNKV
SVAPFKRKDADNDPEDESESRVMACCWGPGKPATTIVMLDSAGEMVDVLYAGSVSVRSQA
VADQQRKKNDHQRLLKFMTDHQPHAVCVGAANMACRQLKDDIYEVIFKIVEDHPKDVSQD
LEYFSIVFGDESLPRLYENSRISSDQLPGQPGIVKRAVALGRYLQNPLAMVATLCGPGKE
ILSWKLCPLEHFLTPDEKYEVVEQVMIDATNQVGVDINLASSHEWLFAPLQFISGLGPRK
ASALQKAFVRAGSIFNRKEIPMGKILRKKVFINAVGFLRVCRSGAASASSHIMDLLDDTR
IHPESYDLAKNLAKDVYAEDVPNEPNDMDDDVQEMAIEHVRERPHMLKVLDINEYAKSIF
NQYGTNKRETLYDIKMELLHGFQDWRTPFKEPGAEEEFAMLSGETDDTISEGRIVQVTVR
HVQENRIICAFDSGLKGMIFSDDFSDDGYDPEKVHEGDILTCKIKQINKNRLVVYLTTKA
SDLRRRPYNIRNRDPYYHEDEISLQSEMEKARKDKERAKKHFKPRMIVHPRFQNLTADET
MEYLSDKEPGESIIRPSSKGPSFLTLTLKVFDGVYAHKEIVEGGKDHKNITSLLRLGKTL
TIDKDTFEDLDEVMDRYVDPLVAHLKIMLSYRKFRKGTKMEVDDLLRAEKAVNPMRIVYC
FGISHEHPGTFILSYIRSSNPHHEYIGLYPKGFRFRKKDFDDIDRLVAYFQKNIDKPPPD
AGPSLRTLAAMVPIKSPAWVSSSGGSVGSASAGSNDGWRGHANSDRERSSTPGSRTGDRF
DSRSIGSRDVHPSGLPRPGRGHGRGHGRGNNLVSGGHDSGYGATKWGSNENNGLSTFPGA
KVQNSPGRDPWGWGSGGSGGGQGGSNTGGSTGGGDWGSGYADRGSDKWGGGGSKSGWGEG
GSGGSSWGTGGNVGGREVRAGLGGVGNGGTGPGWGGNSGGGGGGSSTGGWGGGTSFGGLT
EELANPNGSGSSNTGFGASAPGWGDSRRSVASQPDTGDGTSGGNGVGW
NT seq
5187 nt
NT seq
+upstream
nt +downstream
nt
atgggcggacgagcggtggtctccgatgaggaagatgaggtcgaagaggatgaggaagaa
cgagccatggagcaggacgctgatgacgttggtgatgggggcaacgatgatgaggaggaa
gaagaagaagaggggcaggatgagtacgagcaagatggatttatagtggacgatgtggaa
gaggaggaagcagaggaagaagaggaggaggaaaaacaggagagtgacgaggagagacat
agaaaaaggaagaagaagagaagggattcagagaaaaattacgttcttgatgaggatgat
tatgagttacttcaagacaacaacataaccggattccgtcgacctcaaccaagtagcaaa
tttaagcgattgaagaaggctggaagggacaatgaagtggagcggtctgggttttcagat
gatgaagaatttgatagggacagtcgtggtggccgaacagctgaagaaaaacttaagcgt
agcttgtttggagacgacgaagtggtgccattagaggatatcgctgaggaagaagagcag
cccgaagaagaagaagaagcggacattattggggaggaagatgaaatggcagattttatc
gtggatgaagaagatgttgatgagactggtgctgttgtaagaaagaaaaagcccaagaaa
aagatgtcacgccaagccccaggagtttcatcatctgctttacaagaagcccatgaaata
tttggtgatgttgatgagcttctaatgctacggaagcaaggccttgcagctgtttctgct
gatggcagttggagtgagaagagactggaggatgagtttgaaccttttattctctcagag
aagtatatgaccccaaaggatgacattatccgagaaacagatgtgcctgagagaattcag
ttgtctgaggacaaaactgggtcacctccgaccgatgataaaagcatagaagacgagagt
acgtggatatacagccaacttactagtggtggtatttctcctctagttggttatgatcaa
atagtcaaagagataaataaggaggaaattggaaatgtcttgacaatgatgcatgtgcag
aagcttgatattcctttcattagcatgtaccgcaaggagttatgtcacagtcttttgaaa
gatcctgatgccaacatggcagatattgaagaaacgccaaagatgaagtggcataaggtg
ctctgggctgttcagacattggacagaaaatggttgttgcttcagaagaggaaaagtgcc
ctccattcctactataacaaacgctttgaagaggaagctcgaagaattgataatgaaacg
agacttgcattaaatcaacaacttttcaaatcaattacggaagctctgaaggatgcaaga
tcagagagagaggtcgatgatattgatgccaagttcaatttgcattttcctccaggtgaa
gttgatacagaggatgttcaatttaagagaccaaagcggaaatcattgtacagtagtttc
cacaaagctggtctctgggaggttgctaacaaatttggtgctaattctgagcagtttggg
ctgcttctctcattagaaaagatatcagatgaatttgaagatgcaaaagaaactcctgaa
gaaattgcagcaaattttacatgtgctttgtttgaaacaccacaagatgtgcttaaaggt
gctcggcacatggcagcagtggagattggatgtgagccaaatgttagaagacatgtgcgc
agtatctttatggagaaggctgtcgtgtcaacaagtcctactcctgagggaaatatggca
attgattcctatcatcagcttgcaggtgtcaagtggctccgcaataagccgttatccgag
tttgtggatgctcaatggctacttatccaaaaaggtgaagaagagaaactgcttaaggtc
acgatcaaattaccagaagatatccaaaagaaattgttaagtgatgcttccgagtattat
ctgagtgagcgtgtcagtagatctgctcagctttggaatgagcaacggaagatgatattg
gacgactcatttctcacccttattcttccatcaatggcaaaggaagctcaatcactattg
actgctagggccaagagttggcttcttatggaatatggaagacagttgtggaataaagtc
tctgttgcccctttcaagcggaaggatgcagacaatgatccggaggatgaatctgaatca
agggtaatggcttgctgttggggacctgggaagcctgcaactacaattgttatgttggac
tcggcaggagaaatggtggatgtgctgtatgctggttctgttagtgttcgatcccaggct
gttgctgatcaacagagaaagaaaaatgaccatcaaaggcttctgaagttcatgacagat
catcaacctcatgctgtctgtgtgggagcagcaaatatggcctgcagacaactgaaggat
gacatttatgaagttattttcaagatagtggaagatcatccaaaagatgtcagccaggat
ctagaatatttcagtattgtcttcggggatgaatccttgcctcgcctatatgagaattca
agaatttcttcggatcaactccctggtcaaccaggtattgtgaaacgtgccgtggctctt
ggtcgatatctgcaaaaccctttggcgatggttgctacactctgtggaccagggaaagag
attctatcttggaaactttgtcccctggaacattttcttacaccagatgagaagtatgag
gttgttgagcaggttatgattgatgcaaccaaccaggttggtgtggatataaatctagct
tcaagtcatgaatggctttttgctcctttacagttcatttctggtcttggaccacggaaa
gcatctgctttgcaaaaagcatttgttagggccggatccatttttaatcgtaaggagata
cctatgggaaagattcttagaaagaaagttttcattaatgctgttggatttttgcgtgtt
tgccggagtggggcagcttctgctagcagtcacattatggaccttctggatgacacaaga
attcatccagagtcgtatgatctagcaaagaatctggccaaggatgtttatgctgaagat
gttccgaatgaacctaacgatatggatgatgatgtacaagagatggcaatcgaacatgtg
agggagaggccacatatgcttaaagtgctcgacatcaatgagtatgccaaaagcattttt
aatcagtatgggaccaacaaaagggagaccctgtatgatataaagatggagcttctacat
ggattccaggattggcggacacctttcaaagaacctggtgcagaggaggagtttgctatg
ctctctggtgaaacggatgataccatttcagaagggagaattgttcaggtcacagtgcgc
catgtacaagaaaatcgtatcatttgtgcttttgattctggtttgaaagggatgattttc
tctgatgatttctcagacgacggatatgatcctgagaaggtacatgaaggtgatatactt
acctgcaagattaagcagatcaataagaatagacttgtggtttacctgacaaccaaggct
agtgatttgaggagaagaccttacaatattcgtaatcgtgatccttattaccatgaggat
gagatcagtttgcagagtgagatggagaaggcccgaaaggacaaggaacgtgcaaagaaa
catttcaaaccaaggatgattgttcatccccgtttccagaatttgacagctgatgaaaca
atggagtacctatctgataaggaacctggtgagagcattatccgacccagttctaaaggg
ccttcatttttgacattgacactgaaagtttttgatggagtatatgctcataaagaaata
gtggaaggtggaaaagatcacaaaaatattaccagcttacttcgactgggaaagacattg
acaattgataaagatacatttgaagatcttgatgaagttatggatagatatgttgatcca
ttggtcgctcacctgaaaattatgctttcttatcgcaaattcagaaaaggaacaaagatg
gaagttgacgatttgttgagagcagagaaggcagtaaatccaatgaggatagtctattgt
tttgggatttctcatgaacatccagggacattcattttatcctatatcagaagttcaaat
ccacatcatgagtatattgggttgtatccaaaaggttttaggtttcggaaaaaggatttt
gatgacattgatcgcctggtggcttattttcagaagaacatagacaaaccaccacctgat
gctggcccatctttacgaacacttgctgcaatggtaccaatcaaaagccctgcatgggtt
tcctctagtgggggatctgtaggcagtgcctcagcaggcagtaatgatggctggagaggt
catgcaaattcagaccgggaaagatcttccacgcctggttcgagaacaggtgacagattt
gactctaggagcattggcagtcgagatgttcatccaagtgggcttcctcgtccaggccga
gggcatgggcgagggcatggcagaggaaataatttggtcagtgggggccacgattctggt
tatggtgctacaaaatggggttcaaatgaaaacaatggcttgagcacatttcctggtgcc
aaagttcagaattcccctggcagggacccttggggctggggcagtgggggcagtggtggt
ggacagggtgggagcaacactggtggtagtactggtggtggggattggggaagtggctat
gctgatagaggcagtgacaaatggggtgggggtggcagcaagagtggttggggcgaaggt
ggcagtggaggtagtagctgggggacaggaggcaatgttggtggcagagaggtcagggct
ggcttggggggagttggaaacggtggtactggtcctggctggggtgggaatagcggtggc
ggtggcggtggcagcagcacaggtggctggggtggaggcactagctttggcggtttgact
gaggaattagcaaatcccaatggctcaggcagttcaaacactggatttggtgcttcagct
ccgggatggggtgattctaggagatcagtagcatctcaacccgatactggagacggtacg
agtggaggaaatggagttggatggtaa
DBGET
integrated database retrieval system
