Musa acuminata (dessert banana): 135626702
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Entry
135626702 CDS
T03447
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135626702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mus03041
]
135626702
Spliceosome [BR:
mus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
135626702
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
ANAPC4_WD40
NBCH_WD40
PRP4
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
eIF2A
Beta-prop_WDR75_2nd
Beta-prop_SPT8
Nbas_N
Motif
Other DBs
NCBI-GeneID:
135626702
NCBI-ProteinID:
XP_064988293
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Position
BXJ2-11:complement(29423627..29428670)
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AA seq
530 aa
AA seq
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MEDDAPRTLNPAPPPPDHAPAPPVPAALGPPPPIAPIPVPPVLRASVGSDSDREGSIPRP
SADDYEVSEESRLARERQEKLVQELLMKRRAYAMAVPTNDSAVRARLRRLGEPVTLFGER
EMERRDRLRSIMVRLDSEGQLERLLKAHEDEQAAVTTAGAAAEDEGPHQYPFYTEGSKEL
FETRVEIAKWSVARAKARLERARRRRDDPDEDEEAEAEFVVNQAGGLVLECSEIGDDRPL
SGCSFSHDGTMLATSAFSGVAKLWSMPQVTKVATLKGHTERLTDVAFSPVDNHIVTASAD
HTAKLWNTDGSLLRSFDGHLDRLARVAFHPSGKYIGTASFDKTWRLWDINTGMELLLQEG
HSRSIYGICFHPDGSLAASSGLDALARVWDLRTGRSILAFEGHVKPVLGLSFSPNGYRLA
TGSEDNTCRIWDLRKRKSLYTIPAHSHLISQVKFEPQEGFFLATASYDTKAMVWSAQDFK
PIKTLSGHEAKITSLDITRDGQQIATVSHDRTIKIWTSRSNGKENDMDLD
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacgccccccgaaccctaaaccccgcccctcctccgcccgaccacgcccct
gcgccaccggtccctgccgccctcggcccgcccccacctatcgctcccatcccggttcct
cccgtactccgcgcctccgtcggatccgactccgaccgcgagggctccatcccccgcccc
tcggccgacgactacgaggtctccgaggagagccgcctggcccgggagcgccaggagaag
ctcgtccaggagctcctaatgaagcgccgcgcctacgccatggccgtccccacgaacgac
tccgccgttcgcgcccgactccgtcgcctcggcgagcccgttaccctctttggcgagcgc
gagatggagcgccgcgaccggctccggtccatcatggtccgccttgactccgagggccag
ctggagcgcctcctcaaggcccacgaggacgagcaggctgcagtgacgaccgccggagct
gccgccgaggatgagggaccgcatcagtaccccttctacacggaaggatcgaaagagctt
tttgagacaagggtggagatagccaagtggtcggtcgctagggcgaaggctaggctcgag
agggcgaggaggaggagggacgaccctgacgaggatgaagaggctgaggccgagtttgta
gtgaatcaggcaggcgggttagtccttgaatgcagtgagatcggggatgaccggccgctt
tccgggtgttccttctctcatgatggcacgatgctcgccacgagtgcttttagtggggtt
gctaaattatggagcatgcctcaagtaacgaaagttgcaactttaaagggtcacacggag
cgtttaactgatgtggcattctctcctgttgataaccatattgtaacagcctcagctgat
catactgcaaaattatggaacactgatgggtctcttttacggtcatttgatggacaccta
gatcgtcttgctcgtgttgcatttcatccatcaggaaaatacataggaactgctagcttt
gataagacatggagattgtgggatattaatactgggatggagttattacttcaagagggg
catagtaggagcatatatgggatttgtttccatcctgacggatctttagcagcatcatct
ggtcttgatgcactcgctcgtgtatgggatcttcgtactggaagaagcattcttgccttt
gaaggccatgttaagccagttcttggacttagcttttctcctaatgggtatcgcttagcc
actggtagcgaggataatacgtgccgtatatgggatttgagaaaaagaaagagtttgtat
acaataccagctcattcgcacctcatttcacaagtaaaatttgaaccccaggaaggcttt
tttctggctactgcttcatatgacactaaagcaatggtttggtcggctcaagatttcaag
cctatcaaaactttgtctggacatgaagctaagatcacgagtttggatataacaagagat
gggcagcagatagcaactgtctcacacgaccgcaccatcaagatatggacgagtagaagc
aatggaaaggagaatgacatggacttggattaa
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