Musa acuminata (dessert banana): 135627018
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Entry
135627018 CDS
T03447
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135627018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mus03021
]
135627018
03019 Messenger RNA biogenesis [BR:
mus03019
]
135627018
Transcription machinery [BR:
mus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135627018
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
135627018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2
zf_UBZ
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
135627018
NCBI-ProteinID:
XP_064988997
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Position
BXJ2-11:complement(33226196..33235966)
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AA seq
1141 aa
AA seq
DB search
MEMESSRRSAMDRSREPGSKRPRLVAEDAVVRDRVAFDRDRLIPPARAGNQPLVSRLPRA
RERQERDDAAAPVGSHQELVAQYRTALAELTFNSKPIITNLTIIAGESLHAAKEIAAVIC
ANVLEVATEQKLPSLYLLDSIVKNIGRDYIRYFASRLPEVFCKAYKQVDSSIRPSMRHLF
GTWRGVFPHASLQLIEKELGFPPVINVSSGSVSSKLDSQPQRPAHSIHVNPKYLEARQKL
HSSRAKDISNDEVSGVVSTFDDAESSDKIVMAGKSRQRTNLPTKMPNMQHSQRVTVNNVI
NEKKGLKDARDHEYSSDISREADLGILRVSERLKDQDGHGKPYYGVGITATQAQLSERNG
FDVNHSYGTYGKSGPMRANSQQTSVCDTDRMKLESSRSWKNSEEEEYMWDAIKTRPTDYG
GTNNSIKGGRTSSNADKSASLQRGKWIPLETEHAKTNLNTVDAFSHLVEMSKTESRIPLF
KDLGEHILPSRAKHETDSVLKTSSNSLLQQRASSENSSSFWSRRDVPASEVGINDKSSRV
GQQLIPSGGGLSTHDNSSLPLPGLQSSVLSSRLSPHANTPVPGATSEQQRQHLSQPPLSL
SSHLPPPEPIQHLKPHNITDQNHLLFNSLSQVGRKPLQPVGSLDIFPVKNRAQPFDSLSG
SIESQSDTSRQLEGLLDSATSASLNHLPLIKQSRHNLSQQQAETQPLSRTEAQTQPSLKI
KTQSQPSHQTEKLPPLPMDLGIHQTGKDSGRSMSHANNPVVEASSQPSTSSLLAAIMKSG
LFSNNSVSNFQKMSVQPPLPFGPPPIQVFTSAVPLSTPLTFTPAFALGSIPDLKPPHSGD
VIPPLPPGPPPSSSSVDVNSENSKTSGPTLSPLSGILSSLVAKGLIASPPTVLTTTSAAQ
LPDKVRDQCTNNSFEQVSLSLTTPGVAPPLEDQPAASVSTASAALVQSSATELKEHLGTE
FKSEIIRGSHPSVVRSLFDDLKLQCHKCGLRFRLQEQLQWHLDWHVSKESETSNFNQRSR
KWFSDMRYQQSSSEVAISLEEVGSSEKDSELMVPADESQSICALCGEPFEDIYSEVRDEW
MYKGTVYLDLSKKQDDASNTNGTPGQLLIVHAHCMSQRFCHNMDVAEHDKVDQTHVPIGL
F
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagagctcccgcagatccgccatggatcgctcccgagagcctggctcgaag
cggcctcgattggtggcggaggacgcggtggtgagggaccgcgtcgccttcgaccgggac
cgcctgatccctccagccagggccggcaaccagccgttggtttctaggttgcctagggct
cgcgagaggcaggaaagggacgatgctgctgcgccagtaggatcgcatcaagagctcgtg
gcacagtacaggacggcccttgccgaactaactttcaattccaagcctatcatcaccaat
ctgaccattattgccggagagagtcttcacgccgcgaaggaaattgccgctgtcatctgc
gccaatgtcctcgaggtggccactgaacaaaagttaccttccctgtatctcctagatagt
atcgtgaagaatattggaagagattatatcagatatttcgcttcaaggctacctgaggta
ttctgcaaggcctataaacaggttgattcttctattcgtcctagtatgagacatcttttt
gggacatggagaggagtgttcccccatgcctcacttcagttaattgaaaaagaacttggt
ttcccaccggttatcaatgtttcatctggatctgtatcatcaaaacttgattcccaacca
caacgtccagcccacagcattcatgtaaatccaaaatacttggaggcaaggcagaaactg
cattcctcaagggccaaggacataagcaatgatgaggtcagtggtgtggttagtactttt
gatgatgcagagagttctgacaaaattgttatggcaggaaaatcaaggcaaaggacaaat
ctgccgactaagatgcctaatatgcaacattcacaacgggtaacagtaaacaatgtgatt
aatgagaaaaaaggacttaaagatgctagagatcatgaatattcttctgatatttcacga
gaggcagaccttggcattctaagggtcagcgagaggctcaaagaccaagatgggcatggc
aaaccatattatggcgttggtattactgctactcaggcacaattaagcgaaaggaatggt
tttgatgtcaatcattcttatggaacctatgggaaatctggacctatgcgagctaatagc
cagcaaacttcagtttgtgacacagatagaatgaaattggaatcatctagaagttggaag
aactctgaggaggaagaatatatgtgggatgccataaaaacccgaccaacagattatgga
ggtaccaacaactcaatcaaaggtggaaggactagtagcaatgctgacaagtccgctagc
ctgcaaagaggaaagtggatccctctggagactgaacatgcaaaaactaacttgaacaca
gttgatgccttctctcacttagtggagatgtctaaaaccgaaagcagaattccacttttt
aaggaccttggtgagcacattttgccatctcgtgccaagcatgagactgattcggtgtta
aagacctcttcaaattcactattacaacaaagggcttcatcagaaaattcctcatccttc
tggtctcgccgtgatgtaccagcatcagaggttggaataaatgacaaaagctcaagagtt
ggtcaacaattaatcccttctggtggtggtttatctacacatgataattcatctttgcct
ctgcctgggctgcaatcttctgtgctatcttcaagattgagccctcatgctaatacccca
gtgccaggtgcaacttctgaacagcaaaggcagcatctttcacagcctcctctatcgctg
tcttctcatttacctcctccagaacccattcaacatctaaagccacacaacataacggat
caaaatcatctgttgtttaattcattatctcaagtgggtcggaagcctttacagccggta
gggtccctggatatctttccagtgaagaatcgtgctcagccatttgatagtttatcaggc
tcaatagagtcccaatcagatacttctcggcagcttgaaggcttacttgattctgctact
tcagcatccttaaatcatcttcctttgataaagcaatcacgacataatctatcccaacaa
caggcagaaactcagcctttgtctcgaactgaagcccagacccaaccttcccttaagatc
aaaacccagtctcaaccttcccatcaaactgagaaactgccacctctgcccatggatctt
ggaattcatcagactggaaaagactctggcagaagcatgagccatgcaaataatcctgtt
gtggaagcctcaagtcagcctagcacaagtagtttgttggctgctatcatgaagagcggt
ctattttcgaataattcagtcagcaactttcagaagatgagtgtacaacctcctttgcca
tttggacctcctcctatccaggttttcacatcagctgttcctttaagtactcccttaaca
tttacacctgcttttgcccttgggagcataccagatttaaaaccaccacattcaggagat
gtgatacctcctctaccacctgggcctccgccttcctcatcctcggttgatgttaattca
gagaactccaagacgtctgggcccaccctgagtccactttctggtattctgagttcatta
gttgcaaaaggtttaatagcctcaccaccaaccgtgttgacaactacatccgcagctcag
ctgcctgataaggtccgagatcaatgcactaacaatagttttgagcaagtttctttaagc
ttgactactccaggtgttgctccacctttggaagaccagcctgctgcatcagtatccact
gcaagtgctgcactagtacaatccagtgcaactgaattgaaggagcatttaggcactgag
ttcaaatctgaaatcattcgtggatctcatccttcagttgtcagaagcctatttgatgac
ctaaagcttcaatgccacaaatgtggtctaaggttcagactccaagagcagctccaatgg
catttagattggcatgtctccaaggagtctgaaacaagtaattttaaccaaaggtctaga
aaatggttttcagacatgagatatcagcaatcttcctcagaggtggcaatatcgctggag
gaagttggttcatctgaaaaggattctgaactgatggttcctgctgatgagagccaaagc
atatgtgcattatgcggagaaccatttgaagatatttactctgaagtacgggatgaatgg
atgtataaagggactgtttatttggatctatcaaagaagcaagacgatgcaagcaacacg
aacggcactcctggccagcttctgattgtgcatgctcactgtatgtcacagaggttttgc
cataacatggatgtcgccgagcatgataaagtggaccaaacacatgtgccaattggacta
ttttga
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