Musa acuminata (dessert banana): 135627047
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Entry
135627047 CDS
T03447
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE-like
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
135627047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mus03009
]
135627047
Ribosome biogenesis [BR:
mus03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
135627047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Utp13
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_Nup120_160
Beta-prop_WDR19_1st
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_HPS5
Beta-prop_WDR75_2nd
WD40_like
Beta-prop_NWD2_C
Beta-prop_Vps41
Cytochrom_D1
UTP15_C
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
135627047
NCBI-ProteinID:
XP_064989069
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All DBs
Position
BXJ2-11:33592876..33606041
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AA seq
896 aa
AA seq
DB search
MAAPTPLALKRSYRCVSSLQQFYSGGPFAVSSDGASLACACGDEIKIVNSSDACVLASLG
CDSESVTAFTFSPDGCFLFSAGHSRLIRVWDLSSRKCVRSWKGHDGPAMTMSCHSSGGLL
ATGGADRKVCVWDVDGGFCTHFFKGHQGVVTCIKFHTDPNRLLLFSGSDDASVRVWNLES
KKCVAVLEKHFSPVTSLALSEDGQILLSAGRDKVVNKWDLRNYSFNMTIPTYEMVETVCI
IQPGNCLSALLETSGHRKPGASAPVYFLTVGERGIVRIWSSEGAVCLYEQQSSDVTLGSD
EDDLRRGFLSAVVLPSDLGLLCVTADQQFLFYCPMKSAGGMLQLNLYKRLVGYNEEILDM
KFLGDDEQYLAVATNLEQVRVYDVASMSCAYVLVRHTDIVVCIDTCISTYGRTMLVTGSK
DNSVRLWDVKSRHCIGIGRGHMGAVGAVAFSKKWKNFLVSGSSDRTIKVWSFEGVSEDGD
QEISLKAKAVVAAHDKDINSLAVSPNDSLVCSGSEDHTACIWRLPDLVSVAVLKGHKRGI
WSVEFSPVDQCVITSSGDRTIKIWAVSDGSCLKTFEGHTSSVLRASFLSRGTQFVSCGGD
GLIKLWTIKTSECIATYDQHEGKIWSLAVGKKTEMLVTGGTDALINFWHDSTAADKQEAF
LREEEAILRAQELENAVSDADYAKAIQLAFELRRPHKLFDLFSRLCRRRDVEDPIEKALG
GLGKEEIHVLLEYVREWNTKPKLCHVAQAVLFRMFRIFPPTDIVEVKGVSELLEGLIPYS
QRHFSRIDRFVRSTFLLDYVLTRMSVVDPEETNLPNNGEHPMASENGVADEQDAPQSNSQ
VDEISCKGDTGKSSTSNEMDSMTSLKKRKSRKSKKGSTKKVKLTKHKNSSTISVEA
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccgactccactggcccttaagcggagctaccgctgcgtgtcgtcgctgcag
caattctacagcggcggccctttcgccgtgtcctccgacggcgcctccctcgcttgcgct
tgcggcgacgagataaagatcgtgaactcctccgatgcctgcgtactggcgagccttggc
tgtgattcagagtctgttaccgccttcaccttcagccccgatggctgctttctcttctcc
gcaggccacagccgactgatccgggtttgggatctttcctcccgcaagtgcgttcgttct
tggaagggccatgatggtccagctatgaccatgtcatgccattcttctggtggtttgcta
gcaacaggaggagcagatagaaaggtttgtgtttgggatgtagatggtggtttttgcacg
catttcttcaaaggtcaccagggagttgtgacatgcatcaagttccacaccgacccaaac
cggttacttctattctcaggtagtgatgatgccagtgttcgagtttggaatcttgaatct
aaaaagtgtgttgcagtgctggaaaaacatttctcaccagtgacttcattggcattatct
gaagatggccaaattttactgagtgctggaagagataaggttgtgaacaaatgggacctg
cgtaactatagctttaatatgacaataccaacatatgagatggtggaaaccgtttgcatc
attcaacctggtaattgtttgtctgcccttttggaaaccagtgggcatagaaaacctggt
gcttcagctccagtttactttctgactgttggtgaacgtgggattgtacgtatatggagc
tcggaaggtgcagtttgcttatatgagcagcaatcttcagatgtaacccttggctctgat
gaggatgacttgagaaggggattcctatcagctgttgtattaccttcagatttaggattg
ctctgtgtaaccgctgaccagcagtttctgttttattgccctatgaaatctgctggagga
atgcttcagttgaacttgtacaagagacttgtaggatataatgaagagattcttgatatg
aagtttctaggtgatgatgaacaatatcttgctgttgctacaaatctggaacaggtgcga
gtatatgatgttgcatccatgtcatgtgcctatgttctagtgcggcatacagacattgtt
gtctgcattgacacttgcatttcaacttatgggagaacgatgttggtaacaggaagcaag
gataatagtgtccggttatgggatgtcaaaagcagacattgtatcggaattggtagaggt
catatgggcgctgttggagctgtagctttttctaagaaatggaagaattttttggttagt
ggtagcagtgatcggaccattaaagtctggagctttgaaggtgtctctgaagatggggat
caggagatttcccttaaagcaaaggcagttgtggctgcacatgataaagacatcaattct
cttgccgtctcacccaatgatagtcttgtttgtagtggttctgaggatcacactgcttgt
atttggagacttcctgatctagtatctgtagctgtgcttaaagggcacaaaaggggaatc
tggtctgtggagttctctcctgtagatcaatgtgtaataacatcatctggtgatagaact
ataaagatatgggctgtttctgatggctcatgcttaaaaacatttgaaggccatacttca
agtgtattacgagcttcatttctttcacgtgggacccaatttgtttcatgtggtggtgat
ggcttaattaaactctggacaatcaagacaagtgagtgcattgcaacctatgaccagcat
gaaggcaagatttggtcattggctgttgggaagaagacagagatgctagtgactggtggt
acagatgccttaattaatttttggcatgattcaactgctgcagataagcaggaagccttt
cttagagaggaagaagcaattttgagggcgcaagaactggaaaatgctgtgtcagatgct
gattatgcaaaggcgattcaacttgcatttgaacttcggagaccacacaaactctttgat
ctattttcacgtctttgcaggagaagagatgttgaagacccaatagagaaggctcttggt
ggtcttggaaaggaagaaatccatgtgcttcttgaatatgtacgggaatggaacacaaag
cccaaactgtgtcatgttgcacaggcggtgctttttcgaatgttcagaatctttcctccg
actgacattgtggaggttaagggtgttagtgaactccttgagggtcttataccttattcg
cagaggcattttagcaggattgacaggttcgtgagaagcacctttttgttggactatgtt
ctgaccaggatgtccgttgtcgacccagaggagacgaaccttccaaataatggagaacat
cctatggcttcagagaatggtgtggctgacgaacaagatgcacctcaaagtaatagccaa
gtagatgagatatcgtgcaaaggtgacacaggcaaatcatcgacctctaacgagatggac
agtatgacatctttgaagaaaagaaaatcaagaaaatcgaagaaaggctcaaccaagaaa
gtcaagttgacaaagcacaagaacagttcaaccatttcagtggaggcctga
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