Musa acuminata (dessert banana): 135627440
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Entry
135627440 CDS
T03447
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog B-like isoform X1
KO
K11267
sister chromatid cohesion protein PDS5
Organism
mus
Musa acuminata (dessert banana)
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mus03036
]
135627440
03400 DNA repair and recombination proteins [BR:
mus03400
]
135627440
Chromosome and associated proteins [BR:
mus03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
135627440
DNA repair and recombination proteins [BR:
mus03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
135627440
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
TPR_DNAAF5
HEAT_GCN1
ACOX
Motif
Other DBs
NCBI-GeneID:
135627440
NCBI-ProteinID:
XP_064989613
LinkDB
All DBs
Position
BXJ2-11:complement(33348209..33376361)
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AA seq
1434 aa
AA seq
DB search
MAVPPERVVQEVGKSLVRPRLSKDSLVKFLKEAEDALSKLNQSSTLQIALGPLSHSLSQI
NLLQHKDKEVRLLVAVCFSEIIRILAPEPPFSDEIFMHIFRLIIGTFIDLADTASPYFTR
RTKILESFAALRCCVIMLDMGCEDLVLEMFKVFFSVVRQSHQRSLIQAMLSIMTLVIEEK
VTQPLLGIVLQNLMKADKRHTFLAWHDAEIRTRLPMFAYVTKGGAVNEAPTTGVLWKGAA
SKLAVSLIQNCAGKLESPIHGFLTSCIFDNDASANEFKKLYHEIILKLYQCAPQILVAVI
PNLTHELLVDQVDIRLRAVHLVGKLLAQSELNFSQKFHTVFVEFLKRLSDKSLEVRIAAI
EHARECYLAHPFGSEARDILAALEGRLLDFDDKVRTEAVFAVCDLAKSSLTCFPSEIILQ
AVERLRDKKVSVRKKVMEKLLELYRVYCSRCSEGVLTLNDHYEQIPCKMLLLCFDKECKE
FRPQNIELVFAEDLFPASLSIKERTKHWIAFFSLFKLPHIKALKSILYQKWRLQMELKVY
FALRDEEKENASEEMHMRILTSFMKMSTAFLDSSKAVECFQKLHQITDSNIFKSLLELVD
EDMSSSAAYSTRVSLLKQLGDKHPTYDFLSTLSTKCSYSIFSAEHVRYIMEEVISGNDDR
TKYAQVSKVDLLIVILSIYPTLLRGGEDCLLKLFSMNATLLNEKSLQILSIAGRHVSIAL
SDIYLFLERKCIEGTRTESKYAVSAISSLIHAPDDPIFSNLCEKVVNSLYHGRHIPTLLQ
SLGCISQYSPSTYELYKKQIMQFIIQKLLCSKVDSDQASSNDGALCSLSCKLKMYGLKSV
AKSFLPHEVSQIRHEIKEFFNILSDMILGIGTINENILSQSDKVHLRLAAAKCILRLATR
WDLHIPPDIFHLVIMSARDPSSTVRKSLLCKIHKLLMEQAIPDRYACAFAFTSVDCIGDI
RNDSVKFFTAFLTARNKKFLINKNALAQETDGVAITKHPGYIVVFVIHVLAHDKNFPSDN
CQDQDVYAEFCSPLIFIIRALLNLNCGRSNQNDASYMASYLLGIFLAIQKADDAVDAKFT
PKLHILSKICLLALKVLTQHCKSPLDASHLVLLPSSYFKACHDARKKGASLHVANFVDKS
FVRRILCAFDSYINQASNSCSKWNHKVQDVGDLDVMKNISNALTMDRQIDQSLGKMKKEK
DNLHPNTKRSQKVCSVRSHMNSVSHSSSMSTELVHGIINLEPVNAEYEERKEQVSSSDSV
SICLVIPTSQVSTKAVALKGFMPSTTNERCVTNGSSTSQPETSKADIECPLDSQVANGNG
DVELLDSEDKTWEAINEMPLLDKGRCNLQPDEGLDSSSCSPEEVIPTAGDDSDKTNPAAS
DERTENLCASTNLSSVGAGKGNKRLLPRNASKNSLSDLMDGNMSNSRRIQPRRQ
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgcctcccgagcgcgtcgtacaagaggtcgggaagagcctcgttcgtcctcga
ctcagcaaggactctctggtgaagttcctcaaggaggctgaagacgctttatcgaagttg
aatcagtcttctactttacagattgcattaggaccgttaagccattctctttctcaaatt
aacttacttcagcataaagacaaagaagttaggttattggttgcagtgtgtttcagtgaa
atcatccggatcctggcacctgaaccacctttcagtgatgagatatttatgcacattttt
aggcttattattggtactttcattgacctggctgatacagcgagtccctattttacaagg
aggacaaagatattggagagttttgctgccttgagatgttgtgtgattatgttggacatg
ggttgtgaggatttagttttggaaatgttcaaagtttttttctctgttgtcagacaaagt
catcaaagaagcttgatccaagctatgctgtctattatgacacttgttattgaggaaaaa
gttactcagccgcttctgggcattgttctgcaaaatctaatgaaggcagacaagagacat
acatttcttgcttggcatgatgcggaaataaggaccagattaccaatgtttgcttatgtt
acaaagggtggcgcagtgaatgaggcaccgaccactggggttttatggaagggtgcagcc
tccaaacttgccgtatctctgatccagaattgtgctgggaagctggagtccccaattcat
ggttttttaacttcctgcatttttgacaatgatgcctctgcaaatgaatttaaaaagttg
taccatgaaattatattgaagttatatcaatgtgctcctcagattcttgtagccgtcatc
ccaaacttgacccatgaactactagttgatcaggtcgatattcgcttaagggctgttcac
ttggttggaaagcttcttgcccaatctgagctcaacttcagtcagaaattccatacagtc
tttgttgagttcttgaaaagattatctgataaatccctagaagttcgaattgctgcaatt
gagcatgctagagaatgctatttggctcacccatttggcagtgaagcacgtgatattctt
gctgcacttgaaggaagattattagactttgatgataaagtgagaacagaagctgtgttt
gcagtctgtgatcttgctaaatctagcttgacatgttttccatctgagataatactacaa
gctgtagaacggcttcgtgataaaaaggtttctgttagaaagaaagtgatggaaaagcta
ctagagttatatcgtgtatactgtagtaggtgttctgagggggtcctcacactcaatgat
cactatgaacaaattccctgcaaaatgttacttttatgcttcgacaaggaatgcaaggaa
ttcaggccacagaacatcgaactggtctttgcagaagatctctttccagcatcactttcc
ataaaagaaaggacaaaacattggattgcttttttctcgcttttcaagttgcctcacata
aaggctttaaaatccatcttatatcaaaagtggaggttgcagatggaactgaaagtatat
tttgctctgcgagatgaagaaaaggagaatgcttcagaagaaatgcatatgagaattttg
acatcatttatgaagatgtctaccgcattcctagattcctctaaagcggtggagtgcttt
caaaaattgcatcagattacagatagcaatatttttaagtcattgcttgaattggttgat
gaagacatgtcttcttctgctgcctactctactcgggtttcattgcttaagcagcttggg
gataaacatccaacttatgattttcttagtacactttccacaaaatgttcgtattcaata
ttcagtgccgagcatgttcgttatattatggaagaagtcatatctggaaacgatgatcga
accaagtacgcgcaagtttctaaagtagatcttcttattgttattttatccatataccca
acattgctaagaggaggagaagactgtctgcttaaattgttttccatgaatgctacattg
ttaaacgaaaagtctcttcagattttatcaatagctggtcgccatgtttctatagcactc
agtgacatttacttatttctggaacggaaatgcattgaaggaacacgcaccgagtctaaa
tatgctgtttctgcaatatcttctctcattcatgctcctgatgatcctatcttttccaac
ttatgcgagaaagttgtgaactctctgtatcatggacgccatatcccgactctgctgcag
tctttgggttgcatttcacagtattccccatcaacatatgaactatacaagaagcaaata
atgcaattcattatccaaaagcttttatgttcaaaggtggactcagatcaagcatcctcc
aatgatggcgctttatgtagcttatcctgcaaattgaagatgtacgggttgaaatcagtg
gccaaaagttttttgccacatgaagtgtcacagatccggcatgaaataaaagaattcttc
aacatcctgtcagacatgatacttggaattggaaccatcaatgaaaatattttaagtcaa
agtgacaaggttcaccttagattagctgctgcaaaatgtattcttcgacttgcaacaaga
tgggacttgcatataccaccagacattttccatttggttataatgagtgcaagggatcct
tcttcaactgtccgcaagtcattgctctgtaagatacataagctactaatggaacaagct
ataccggacagatatgcatgtgcttttgcattcacttcagttgattgtattggagatatc
cgaaatgattcagtgaaattcttcactgcattcctgacggcacgtaataagaaatttctt
atcaacaagaatgctttagcacaggagacagatggagtagcaatcacaaaacatccagga
tatattgtggtttttgtaatccatgttcttgctcatgataaaaactttccttctgataat
tgccaagatcaagatgtttatgctgagttttgtagtccgctcattttcatcatacgtgct
ttactgaatttaaattgcggccgtagcaatcaaaatgatgccagttatatggcatcatat
ctactgggcatttttcttgccattcagaaagctgatgatgctgttgatgctaaattcacc
cctaaattgcatattctctcaaaaatatgtttgcttgcattaaaagttcttactcagcat
tgcaagtccccattggatgcttcccatctcgtcttgcttccatcatcatatttcaaggct
tgtcatgatgcaaggaaaaaaggagcatctcttcacgttgctaatttcgtggataaaagt
tttgtgaggaggatcctctgtgcgtttgactcttatataaaccaggcttcaaactcatgt
tctaaatggaatcataaggttcaagatgttggcgatttggatgttatgaagaacatatca
aatgctttaaccatggacagacaaattgatcaatcacttggtaaaatgaagaaagagaag
gataatcttcatcctaatacaaagagatctcagaaagtttgttctgtgagaagtcacatg
aattctgtgtcacattcttcttcgatgtcaacagaattggttcatgggataataaattta
gaaccagtaaatgctgaatatgaagagagaaaagagcaagtatcttcttcagattctgtt
agtatctgtctggtgattccaacttcacaggtttctaccaaggcagttgcattaaaagga
ttcatgccttcaacgactaatgagagatgtgttacaaacggtagcagtacctctcaacct
gaaacttcaaaagcagatatagagtgtcctctggattcacaggttgccaatggtaatggt
gatgtagagcttttggactcagaagataagacttgggaagccatcaatgaaatgcctttg
ctggataagggtagatgcaaccttcaacctgatgaagggttagattcttctagctgtagt
cctgaggaagtgattcctactgccggagatgacagtgataaaacaaatcccgctgcttca
gatgaaagaacagaaaatttgtgtgcaagcacgaacttgtcatctgttggtgctggcaaa
ggaaacaagagattgctaccaagaaatgcttcaaagaactctttgtccgatttaatggac
ggaaacatgagtaattctcgaaggattcaaccacggaggcagtag
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