Flagellimonas oceani: GVT53_06610
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Entry
GVT53_06610 CDS
T06500
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mut
Flagellimonas oceani
Pathway
mut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GVT53_06610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mut03019
]
GVT53_06610
03400 DNA repair and recombination proteins [BR:
mut03400
]
GVT53_06610
Enzymes [BR:
mut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GVT53_06610
Messenger RNA biogenesis [BR:
mut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GVT53_06610
DNA repair and recombination proteins [BR:
mut03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GVT53_06610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
CTD8
Motif
Other DBs
NCBI-ProteinID:
QII44357
UniProt:
A0A6G7J1I0
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Position
complement(1417067..1418959)
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AA seq
630 aa
AA seq
DB search
MHKDTTGILKQFWGYDDFRGSQKQIINTVLSGQDVLALMPTGGGKSICYQVPALAKEGIC
IVVSPLVALIQDQVSQLKKRNIKAIALTGGIPPSELNDLLDNCVYGNYKFLYLSPERLQQ
TIVQERIQQMNINLIAIDEAHCISQWGNDFRPAYLGCSILKELVPDIPMMALTATATPRV
VEDIVENLELENVEIFKDSFSRSNIAFKVKHSEDKLYQLKKYMDRVSGSAIVYVRSRKMS
ISLANFLIKNGISASFFHGGIPKSDKEEKLNLWLSGKVRVMVATNAFGMGVDKPDVRLVI
HYQIPDSLESYFQEAGRAGRDGIVSTAIIITSKEDENKAKQQFLSSLPDVAFVKQVYSKL
NNYFQISYGELVSEPLAFKFNAFCKRYDFNPNMTFNAIWILDQNSVLSLAENFKEKTTLQ
FTASKTEIFNYLDKNRKTAPIIQTILRTYGGITEYETKINLYMLSQKTSTGEARLKEILQ
RLADDSIVEYQNNTSDLEITFLVPREDDHTINLFAKKIKDFNQVKQNNMAAMLGYVSNKK
LCRSLYLLNYFGEKTSEKCGTCDICTKKARTASPHDLENRVMELLEIRPHTSRQLEKAIG
AKEKELLRTLERLLEDERVSLNFKNEYIKK
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
gtgcataaggataccacaggcattttaaaacaattttggggttatgatgattttagggga
tcccaaaaacaaatcatcaacaccgttctatcggggcaagatgttctcgcattgatgccc
accggtggaggaaaatccatttgctatcaggtgcccgcattggccaaggagggcatatgc
attgtggtctcacctttggtggccttgatccaagaccaagtgtcacaactaaaaaaaagg
aacatcaaggccatcgctttaaccggcggcatcccaccaagcgaattaaacgaccttttg
gacaactgcgtctatggcaactataagtttttgtacctgtcccctgagcggttgcaacaa
actattgtacaggaacgcatccaacaaatgaacatcaacctcattgccattgatgaggcg
cactgcatatcccagtgggggaacgattttaggccggcctatctcggatgttccatctta
aaagaactggtccccgatataccgatgatggcgttgaccgcaacagctacaccacgcgtg
gtagaggatattgtggagaatctggaattggaaaacgttgaaattttcaaggattccttt
tcccgttccaatatcgcgtttaaagtaaaacactctgaggacaagctatatcagctcaaa
aaatatatggatagagtttctgggagcgccattgtgtatgtacgttccaggaaaatgtcc
atttcactggccaactttttgatcaaaaatggtatttccgcatctttttttcatggaggg
attcctaaatcggataaagaagaaaaactcaacctttggttaagcggtaaggtacgggtg
atggtggccaccaacgcttttggcatgggagtggataaaccggatgttcgcctggtcata
cactatcaaattcccgatagtttggaaagttactttcaggaagccggtagagctggtcgt
gacggaatcgtttcgaccgcaatcatcatcacttccaaagaagatgagaacaaggccaaa
caacagtttttatcctcattgcccgatgttgcctttgtgaagcaggtatattccaagctc
aacaactacttccaaatatcgtatggcgaattggtttccgaaccattggcctttaaattc
aatgcgttttgcaaacgctacgactttaatcccaacatgacctttaatgctatttggata
ttggatcaaaactcagttttatccttagcggaaaattttaaagaaaaaaccacgctccag
tttacagcttccaaaaccgagattttcaattatctggacaaaaacaggaaaacggcaccc
atcatccagaccattctacgtacctacgggggcattacggaatacgagaccaaaatcaac
ctgtatatgctttcccaaaaaaccagcacaggcgaagcacgtttaaaagaaatactgcag
cgattagcggatgatagcattgtggagtatcaaaacaatacgagtgatttggaaatcact
tttttggttccgcgggaagacgaccatacgattaacctatttgcaaaaaaaatcaaggat
tttaatcaggtcaagcaaaataatatggccgcgatgttgggatacgtttccaataaaaaa
ctatgccgtagcctatacttacttaattattttggtgaaaagaccagtgaaaagtgtggt
acgtgcgatatttgtaccaagaaagcgagaactgcatcaccacatgatttggaaaacagg
gtgatggaactcttggaaatccggccccatacgtcccggcagctcgaaaaagccattgga
gcaaaggaaaaagaacttttaagaacattggagcgactgctggaagatgagcgggtctcc
ctaaactttaagaatgagtacatcaaaaaataa
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