Flagellimonas oceani: GVT53_12655
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Entry
GVT53_12655 CDS
T06500
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mut
Flagellimonas oceani
Pathway
mut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GVT53_12655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mut03021
]
GVT53_12655
03019 Messenger RNA biogenesis [BR:
mut03019
]
GVT53_12655
Transcription machinery [BR:
mut03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GVT53_12655
Messenger RNA biogenesis [BR:
mut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GVT53_12655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
AAA_22
Mor
Motif
Other DBs
NCBI-ProteinID:
QII45494
UniProt:
A0A6G7J4M4
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All DBs
Position
2743791..2745419
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AA seq
542 aa
AA seq
DB search
MFEISDLKAKKLPELQEIAKGLNVPKFKSLKKLDLVYQILDVQASNPKAVAETVTATPDE
KPAPKPRKARTPRPKPTEAKSTEGDDTKKAPQKREPRDKKEDSKPQGRPQKKESKPQDNK
PQDNRSHSNNSPQKNQNNNRRNNQNNKPHHDKKNSNFDKDLKNRYKEPEFEFDSIIESEG
VLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKSGDTVLGNIRPPKEGEKYFPL
IKVNKINGLDPQVVRDRVAFEHLTPLFPKEKFKLAEKQSTISTRIMDLFSPIGKGQRGMI
VSQPKTGKTMLLKDIANAIAANHPEVYQIILLIDERPEEVTDMQRNVRGEVVASTFDKEA
TEHVRVANIVLDKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALHK
PKRFFGAARNIENGGSLSIIATALTETGSKMDEVIFEEFKGTGNMELQLDRRISNRRIFP
AIDLISSSTRRDDLLLDENTIQRMWIMRKYLADMNPVEAMEFMEQRIKQTKNNEEFLLTM
NE
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgttcgagatttccgatctaaaagctaaaaagcttcctgagctgcaagaaattgcaaag
ggtcttaatgttcccaaattcaaatcattgaaaaaactggacctagtctaccaaatattg
gacgttcaggcatccaaccctaaagcagttgccgaaacggttaccgcaaccccggatgaa
aaaccggcccctaaaccacgaaaggccagaactccgcgccctaaacccacagaagcgaaa
agtactgagggcgacgacactaaaaaagcgccacaaaaaagggagccaagggacaaaaaa
gaggattccaaaccccagggaagacctcaaaaaaaagaatccaaaccacaggataacaag
ccgcaggacaatagatcccacagcaacaattctccccaaaagaaccaaaacaacaatagg
agaaacaaccagaacaacaaaccacaccacgataaaaagaacagcaactttgacaaggac
ctgaaaaataggtacaaagagccagagttcgagttcgatagtattattgagagtgaaggt
gtactggacattatgcaggatggttacggatttctaagatcttccgactacaactatctt
tcttctcccgacgatatttatgtatcacaatcacaaatacgtttgttcggccttaaatcc
ggtgatactgttctggggaacataagaccccctaaagagggcgaaaaatatttcccgctg
atcaaggtgaacaaaatcaatggactggaccctcaagtggttcgtgacagggtggctttt
gaacaccttaccccattgtttccaaaggaaaagttcaaattggcggaaaaacaaagtaca
atttcaacacggatcatggatttgttctctcccattggaaaaggacaaaggggtatgatt
gtatcccagcccaaaacgggtaagaccatgttgttgaaggatattgccaacgccattgcg
gccaaccatccagaggtttatcaaatcatccttttgatcgatgaacgtcctgaggaggtt
accgatatgcaacgtaacgtgcgcggggaagtggtcgcttcgacttttgacaaagaagct
accgagcatgttagggtcgccaatattgtattggacaaagcaaaaagattggtggaatgt
ggtcacgatgttgtgatccttttggattccattacccgtttggcccgcgcctacaacacc
gtacaaccagcttctggtaaagtattgagtggtggtgtggatgccaacgccctgcacaaa
ccaaaacgtttctttggtgcggcacgtaatatagaaaatggtggttcgctatccattatc
gctacggcattgacggaaacaggctccaaaatggacgaagttatctttgaggaattcaag
ggtaccggtaacatggagctccagttggacagaagaatttccaaccgaagaattttccct
gcaatcgaccttatttcttcctctacgcgaagagacgacctattgctggacgaaaacacc
attcaacgtatgtggattatgcgcaagtatttggcggacatgaaccctgttgaagccatg
gagtttatggagcagcgcataaagcagaccaagaacaacgaggagtttttgctcaccatg
aacgagtaa
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