Flagellimonas oceani: GVT53_20485
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Entry
GVT53_20485 CDS
T06500
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
mut
Flagellimonas oceani
Pathway
mut02020
Two-component system
mut02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mut00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GVT53_20485 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GVT53_20485 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mut03021
]
GVT53_20485 (rpoN)
Transcription machinery [BR:
mut03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GVT53_20485 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
CEP76_N
LacI
HTH_12
Dam
SPT2_N
MarR
Mga
Motif
Other DBs
NCBI-ProteinID:
QII46956
UniProt:
A0A6G7J805
LinkDB
All DBs
Position
complement(4509397..4510854)
Genome browser
AA seq
485 aa
AA seq
DB search
MLKQHLQFKLSQKLSPQQIQLMKLIQLPTQAFEQRLKQELEENPALESGKEENDALDDMY
EDTYDESDDNESIDTEEINIDDYLSDDEIPDYRTQANNYSADDEDKRVPYAAGTSFTQYL
LNQLNTVYLDDEEWAIAEFLVGSVDESGYIRRPLADIMDDLAFTQNIYAEEDKIKHVLKI
VQDLDPPGVAARSLDECLIIQLKRKEQKPSVELAINILERSFEHFTKKHYSKLIQKHHVS
EEELKNAISEIEKLNPKPGGSYSGNTRMIEHIVPDFSIKIVDGELELTLNGRNAPELHVS
KEYSNMLEGYKNAKEKSKSQKDTVMFIKQKLDAAKWFIDAIRQRQQTLFITMSTIMEYQK
EYFMTGDERKLRPMILKDIADKIDMDVSTVSRVANSKYVDTPYGTKLIKDFFSEAMKNEQ
GEDVSTREIKKILETVIRDEEKKKPLTDAKLAKILKEKGYPIARRTVAKYREQLDIPVAR
LRKEI
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaacaacatctacagtttaagctttcccaaaaactgtctccacagcagattcag
ctcatgaaacttattcaattgccaactcaggcctttgaacaaagactgaagcaagagctg
gaagaaaatccagcattggagagcggaaaagaggaaaatgacgctctggatgacatgtac
gaggatacatacgatgaatcggacgacaacgaaagcatcgacacggaggaaatcaatatt
gacgattacctgagtgatgatgaaatacccgattaccggacccaggccaacaattacagc
gcagatgacgaggacaaaagggtgccctatgctgcaggcacctcctttacgcaatatttg
ctcaatcagctcaatacggtttacttggatgatgaggaatgggccatcgccgagtttttg
gtgggcagtgtggatgaaagtggctatatacgacggccgctcgcggacattatggacgat
cttgcctttacccagaacatttatgccgaggaagataagataaagcatgttttaaagatt
gtacaggacctagatcctccaggagtggcagcccgttcgttggacgagtgtttgatcata
caattgaagcgcaaggagcaaaaaccatcagttgagctggccataaacattttggagcga
tcgtttgagcattttaccaaaaagcactattccaaactcatccaaaaacatcatgtatca
gaagaagagctcaaaaacgccatatcggagatagagaaattgaatccgaaacccggaggc
tcatattccggaaacacacggatgatagaacatatcgtgcccgacttttccattaagatc
gtggatggtgaactggagcttacccttaacggaagaaacgctccagaacttcatgtatcc
aaagagtacagcaacatgttggagggctataaaaatgccaaggaaaaatccaaatcacag
aaggacacggtgatgttcatcaaacagaaattggatgccgccaaatggttcatagatgcc
atcagacaacgccaacagaccctgttcattaccatgagcaccatcatggaatatcaaaag
gaatactttatgaccggggacgagcgcaagttgcgccccatgatcctaaaggatatcgcc
gataaaatagatatggacgtttccaccgtgtcaagggtggcgaacagcaaatatgtggac
accccttatggtaccaaactgataaaggatttcttttcggaagccatgaagaacgaacaa
ggtgaggatgtatccacaagggagattaaaaagattttggagaccgttatccgtgatgag
gagaaaaaaaagccccttaccgatgctaaattggcaaaaatcctaaaggaaaaagggtat
cccatagcccgaagaaccgtggcaaagtaccgggaacagctggatattccagtggcaagg
ctacgaaaagaaatttga
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