Candidatus Methylopumilus universalis: FIT94_03940
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Entry
FIT94_03940 CDS
T10531
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
muv Candidatus Methylopumilus universalis
Brite
KEGG Orthology (KO) [BR:
muv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
muv03009
]
FIT94_03940 (rimO)
Enzymes [BR:
muv01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
FIT94_03940 (rimO)
Ribosome biogenesis [BR:
muv03009
]
Prokaryotic type
ribosomal protein modification factors
FIT94_03940 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
YajR_YAM
PrmA
Motif
Other DBs
NCBI-ProteinID:
QDC41212
UniProt:
A0AAX1EZQ3
LinkDB
All DBs
Position
complement(731294..732613)
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AA seq
439 aa
AA seq
DB search
MALHTPKVGFVSLGCPKAGSDSERILTQLRAEGYDISKSYQDADLVVVNTCGFIDSAVKE
SMDAIGEAVKKNGKVIVTGCLGAKKDIIEKEYPNLLAITGPHALNEVMSAVHTHLEKPHD
PFSDLVPPQGIRLTPKHYAYLKISEGCNHRCSFCIIPSMRGDLVSRSIDDVMTEAETLVN
SGVSEILVISQDTSAYGVDIKYRSGFWNGRPVKTKLYDLAQALGSLGVWIRMHYVYPYPH
VDDIIPLMSEGSILPYLDVPFQHASSRILKLMKRPASAENNLLRINKWREVCPNITIRST
FIVGFPGETEAEFEALLDFLEEAQLDRVGCFKYSPVDGASANLLEGQVPEDIKEERLQKF
METQARISHQKLESKVGQTFTVLVDGHDGDYAIARSMADAPDIDGKVYLKDGKLLKPGDF
VDVKIESYDQHDLFAGPNV
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcgttacatactcctaaagtaggttttgtatccctaggctgccccaaagccggttca
gattctgaaagaatattgacgcaattacgtgcagaaggttatgacatctcaaagtcctat
caagatgctgatcttgtcgtagtgaatacctgtggttttattgattcagcggttaaggaa
tcgatggatgcgattggtgaagccgttaaaaaaaatggcaaagtgatagtcacaggttgt
ttgggtgctaaaaaagacatcattgaaaaagagtatccaaatctactcgccattacagga
ccgcatgctttaaatgaagtcatgtcggctgtgcatacccacttagaaaagccacatgat
ccttttagtgatttagtgccacctcaaggcattcgtttaacaccgaaacattacgcttat
ttaaaaatttcagagggctgcaatcatcgatgttcattttgtattattccatcgatgcgt
ggagacctggtgagtcgttcgattgatgacgtcatgacggaagccgaaacattagtcaat
agtggtgtgtcagaaattttagtgatttcacaagatacaagtgcttatggtgtggatatc
aaatatcgaagtggtttttggaatggtcgccccgttaaaactaaactgtatgatttagcc
caagctctgggatctttaggtgtctggatcagaatgcattatgtttatccttatcctcat
gtcgatgacatcattcctttgatgagtgagggttcgattttgccttatcttgatgtgcct
ttccaacatgcaagctctcgcattttgaaactcatgaaacgacccgcaagtgctgagaat
aatcttttgcgtatcaacaaatggagagaagtgtgtcctaatatcacgatacgaagtact
tttatcgtaggctttcccggagagacagaagctgaatttgaagcactgttagattttctt
gaagaggcccaattagatcgtgtcggttgttttaaatattcccctgtggatggtgcgagt
gcaaatcttttagagggccaagtccctgaagacattaaagaagaacgattacaaaaattt
atggaaacccaagcgcgcatcagtcatcaaaaactcgaatccaaagtgggtcaaacattt
accgttttagtcgatggtcatgatggtgattatgcgattgcaagatcgatggcagatgca
cccgatattgatggcaaagtttatttaaaggatggcaagcttttaaagccaggtgatttt
gtcgatgttaaaattgaatcttatgatcaacatgatttgtttgcaggccctaatgtttaa
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