Candidatus Methylopumilus universalis: FIT94_04320
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Entry
FIT94_04320 CDS
T10531
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
muv Candidatus Methylopumilus universalis
Pathway
muv03030
DNA replication
muv03430
Mismatch repair
muv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
muv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIT94_04320 (dnaE)
03430 Mismatch repair
FIT94_04320 (dnaE)
03440 Homologous recombination
FIT94_04320 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
muv03032
]
FIT94_04320 (dnaE)
03400 DNA repair and recombination proteins [BR:
muv03400
]
FIT94_04320 (dnaE)
Enzymes [BR:
muv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FIT94_04320 (dnaE)
DNA replication proteins [BR:
muv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FIT94_04320 (dnaE)
DNA repair and recombination proteins [BR:
muv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FIT94_04320 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
QDC41285
UniProt:
A0AAX1F0B8
LinkDB
All DBs
Position
complement(810671..814132)
Genome browser
AA seq
1153 aa
AA seq
DB search
MSEVHPVSFVHLRCHSEYSITDGIVRIDDYIDKASSQNMPALALTDLNNVFGLVKFYKAA
REKGIKAILGADLWIENEVNRDQPYRILALCQNDKGYLALSEILSRAYLENQYRGRVEVK
KSWLLEKNEGLIILSGAAMGDVGQAILQEHTDIAMNAMKDWATHFKNRFYIEIQRIAEGD
DKKNEARFINQSLSLATSLEIPVVATQPIQFMDQDDYRAHEARTCIAEGFIMADSRRPKL
FSHEQYFKNEVEMTALFSDIPEALQNSVEIARRCNFEFTLGKNYLPDFPTPNKEKLEDFL
ISESKNGLEVRLKELFPDEVKRNEVRHDYDARILFETSIINQMGFAGYFLIVADFINWAK
NNEVPVGPGRGSGAGSLVAYSLGVTDLDPIRYQLLFERFLNPDRVSMPDFDIDFCQEGRD
RVIDYVKQKYGAGSVSQIVTFGTMAARAVIRDVGRVLDLPFNFVDGIAKLIPMELGITLE
DALNKEPQLQDRYNKEEEVKELIDLALRLEGVVRNVGMHAGGVLIAPGKISNFTPIYCQA
NGDSLVSQFDKDDIEALGLVKFDFLGLRTLTILAMALKNANILRGAESLPPLDLNHLPLE
DKTVFQLLKSANTTAVFQLESRGMKDMLKQAKPDCFEDIVALVALYRPGPMDLIPDFCKR
KHGQQRIVYPHPSTESILKETYGIAVYQEQVMQIAQTVAGYSLGAADLLRRAMGKKKVEE
MDAQREGFIAGSLKNGLNERQARELFDLLEKFAGYGFNKSHAAAYAMVAYQTAYLKTHYP
AAFLAASMSADMNNTDNIQIFFEDCKPNSVELLPPDINQSGFEFIPTNTTQILYGLGAIK
GTGLAAIELILESRESKGPFKNLFDFCARLDLRKVNRRVVESLIRGGAFDTLESNRASLL
ASVNLAITAAEQGKANIAQNSLFGEEQTQKVDMVHMDPWTPQQKLQEEKAALGFYFSGHP
FTFFEKRVRPFIKTQIKELKPQEQPYLIAGVIVAIRIRMTARGKMAIVTLDDAISRVDVV
VGNELLTQSQRLVQEDQLLIVEGRVSHDDFTGGIRVTARKLFDLATARNQFAHHLKISCN
GQSDAAKLRDILKPYCGASQNNLKRCRVKIDYHNEKGHVELLLGQDWQVDLHDELIDGLT
QWLSEENVKILYN
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagtccatcccgtctcatttgttcatttaaggtgccatagtgaatattccatc
accgatggaattgttcgcattgatgactatatcgacaaggcttcatctcaaaatatgcca
gcattggcgctgaccgatttaaataatgtatttggcttggtcaagttttataaggcagcg
cgagaaaaaggtatcaaagctattttaggtgctgatctttggattgaaaatgaggtcaac
cgagatcagccttatcgaattttagcgctctgtcaaaatgataaaggctatttagcgtta
tccgaaatcttatcgcgtgcttacttagaaaatcagtatcgtggtcgcgttgaagtgaaa
aaatcttggttgttagaaaaaaatgaaggcctcattattctttcaggggcagctatggga
gatgtgggtcaagccattcttcaagagcataccgatatcgcgatgaatgccatgaaagat
tgggcaacacattttaagaatcgtttctatatcgaaatccaacggattgccgagggagat
gataaaaaaaatgaagcacgttttatcaatcaatctttgagtttagcgacaagcctagaa
attcctgtggtagcaacacagcctattcagtttatggatcaagatgattacagagcccat
gaggcgagaacttgtatcgctgaaggtttcatcatggcagatagccgtcgacctaaatta
ttttctcacgaacagtattttaaaaatgaagtggagatgactgctttatttagtgacatt
ccagaagcgctgcaaaattctgtcgagattgcaaggcgttgtaatttcgaatttacctta
ggtaaaaattacttacctgacttcccaacacctaacaaagaaaagctcgaagacttttta
atttcagaatctaaaaatggattagaagttcgcttaaaagaactttttccagatgaagta
aaacgtaatgaagttagacatgattatgatgcacgcattctttttgaaacttctatcatt
aaccagatgggttttgcagggtacttcttaatcgttgctgactttattaattgggctaaa
aataatgaagtcccggtaggtccaggtcgtggatctggcgctggatcattggtagcctat
agtttaggtgtgacagatctcgatccgattcgctatcaactcctctttgaacgtttttta
aatcctgatcgtgtttcaatgccggactttgatatcgacttctgccaagaaggtcgcgat
cgtgtgatcgattacgtcaaacaaaaatatggcgcaggttccgtttcgcaaatcgtcact
ttcggtacgatggcagcgcgcgctgtgattcgagatgtaggtcgcgtccttgacctccca
tttaactttgtcgacggcattgcgaaactcatccccatggaattagggatcacattagaa
gatgcattaaacaaagaaccgcaattgcaagatcgttataacaaagaagaagaagtcaaa
gaactgattgatctcgcattaaggttagaaggagttgtgcgcaatgtgggtatgcacgct
ggtggcgttttaattgctcccggaaaaatttcaaacttcacaccgatttattgtcaggcg
aatggcgatagtttggtgagtcaattcgataaagatgacattgaagctctaggtttagtg
aagttcgacttcttaggacttcgaacactcacgattttagcgatggcattaaagaacgca
aatattttacgaggagctgaaagtcttccaccgcttgatctaaatcatttgccactcgaa
gacaaaacagtttttcaacttttaaagagtgcaaataccactgccgtcttccagcttgag
tctcgaggtatgaaagacatgttaaaacaagcgaagccagattgctttgaagatattgtg
gcactcgtggcactttatcgtccgggccctatggatttgatccctgacttttgtaaacgt
aaacacggacaacagcgcatcgtctatccacatccctccaccgaatcgattctaaaagaa
acttacgggattgcggtttaccaagagcaggtgatgcagattgcacaaacggttgcaggt
tactcattgggtgcggctgatttacttcgtcgtgcgatgggtaagaagaaagttgaggag
atggatgcgcagcgtgaaggttttattgcgggctccttaaaaaatggactcaacgaaagg
caagcgcgtgaactttttgacttgctcgaaaaatttgcaggctatggttttaataaatct
catgcggcggcttatgcgatggtcgcataccaaacggcttatttaaaaacgcattatccc
gcagcattcttagccgcttccatgtcggcagatatgaataacactgacaacattcaaata
ttttttgaggattgcaaaccgaatagcgtggaattgttgccacccgatattaatcaaagt
ggtttcgaatttattccaaccaatacgacacaaatcttatatggattaggtgccatcaaa
ggtacaggtctagctgcgattgaacttattttagagtcgcgcgagagtaaaggcccattc
aaaaatctttttgatttttgtgcgagacttgatttgagaaaagtgaatcgtcgtgtcgtg
gaatcgcttatccgcggcggtgcattcgacacactcgaatctaatcgcgcttcattactc
gcaagtgtcaatttagccatcaccgcagccgaacaaggaaaagccaacatcgcacaaaat
agtttatttggtgaagagcaaacacaaaaagtggatatggtgcatatggatccatggaca
ccgcaacaaaaactgcaggaagaaaaagcagcgcttggtttttattttagtggccatcca
ttcaccttctttgaaaagcgtgttcgaccattcatcaaaactcaaattaaagaattaaaa
ccgcaagagcaaccttacttaatcgcaggggtgattgtagcgattcgcattcgcatgacg
gcgcgcggcaaaatggcgattgtcacattagatgatgcgatttctcgtgtcgatgtggtg
gtaggcaatgaactcctcacgcaatcacaaagattagtccaagaagatcagcttttaatc
gtcgaaggacgtgtgagtcatgatgacttcacaggcggtatcagagtgaccgcgcgtaaa
ctttttgatttagcgactgcaaggaatcaattcgcacaccatttaaagatttcatgcaat
ggtcaatcggatgccgctaaattaagagacatcctaaaaccttactgtggcgcttcccaa
aataatctcaaacgttgccgcgttaagattgattaccataatgaaaagggtcatgtagaa
ctcttgctaggacaagattggcaggtggatttacatgacgaattgatagacggcttaacc
caatggttgagcgaagaaaacgtaaaaatcctttataattga
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