Candidatus Methylopumilus universalis: FIT94_05530
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Entry
FIT94_05530 CDS
T10531
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
muv Candidatus Methylopumilus universalis
Pathway
muv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
muv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIT94_05530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
muv03021
]
FIT94_05530
03019 Messenger RNA biogenesis [BR:
muv03019
]
FIT94_05530
Transcription machinery [BR:
muv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FIT94_05530
Messenger RNA biogenesis [BR:
muv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FIT94_05530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
S1CSD-TOTE-2
NACHT
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
QDC41502
UniProt:
A0AAX1F0J4
LinkDB
All DBs
Position
1049363..1050622
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AA seq
419 aa
AA seq
DB search
MHLSELKHLPIAQLVEMAITDEIENASRMRKQDLIFAILKNKAKKGDSIYGDGTLEVLQD
GFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDTIQGEIRTPKDGERYFALVKVDEVN
NEAPENTKNKILFENLTPLFPTIPLTLERDINGEENITSRVIDMIAPIGKGQRGLIVASP
KSGKTVMMQNIAHAITSNHPDVSLIVLLIDERPEEVTEMTRSVKGEVVASTFDEPATRHV
QVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQKPKRF
FGAARNIEEGGSLTILATALIDTGSRMDDVIYEEFKGTGNMEIHLDRKMAEKRLYPAINV
NKSGTRKEELLIPKDNLQKIWVLRKLLHPMDDLEAMEFLLDKIKATKNNNDFFDSMRRG
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatctgaattaaaacacctccccattgcacaacttgtagaaatggcgatcacg
gacgaaatcgaaaatgcgagtcgcatgagaaagcaagatttaatctttgcaatcctaaaa
aacaaagcaaaaaagggagatagtatttacggggatggcactttagaagtattgcaagat
gggtttggattcttaagatcacccgacacatcttacctggcaggtcctgatgatatttat
gtatcgccttcacaaatccgtcgcttcaatcttcatacaggagacaccattcaaggtgaa
attagaacacctaaagatggagagcgttacttcgcacttgtaaaagtagatgaagttaac
aatgaagcgccagaaaatacaaaaaataaaattctttttgaaaacttaacgcccctattt
ccaactatacctctcacgcttgaaagagatattaacggtgaggaaaatattacaagtcgc
gtgattgatatgattgcgccgattggtaaaggtcaacgtggcttgattgtagcgagtcct
aaaagtggtaagactgtcatgatgcaaaatatcgcacatgccatcacatcaaatcatcct
gacgtatctttaattgtgcttctaattgatgagaggccagaagaagtgactgaaatgacg
aggtctgtaaaaggtgaagttgttgcgtcaacattcgacgaacctgcaacacgtcacgtt
caagtagctgaaatggttcttgaaaaagcgaagcgtcttgttgaacacaaaaaagacgta
gtgatcctcttggattccattacacgattggcaagagcttacaacacagtcatcccttca
tccggtaaagtgcttaccggcggtgtcgatgccaatgcgcttcaaaaaccaaaacgtttc
tttggggcagcccgtaatattgaagaaggtggctcgctcacaatccttgcaaccgctttg
attgatacaggctcacgcatggatgatgtgatttacgaagaattcaaaggtaccggtaat
atggaaattcatcttgatcgtaaaatggctgaaaaacgactctacccagcaattaatgta
aataaatcaggtactcgtaaggaagaacttcttatccctaaagataatttacaaaaaata
tgggtacttagaaaacttctccaccctatggatgacttggaagcgatggaatttttgcta
gacaagattaaagccactaaaaataataacgacttctttgacagtatgcgaaggggttaa
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