Mucilaginibacter sp. cycad4: SNE26_00365
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Entry
SNE26_00365 CDS
T10709
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
muy Mucilaginibacter sp. cycad4
Pathway
muy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
muy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SNE26_00365 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
muy03021
]
SNE26_00365 (rpoC)
03400 DNA repair and recombination proteins [BR:
muy03400
]
SNE26_00365 (rpoC)
Enzymes [BR:
muy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SNE26_00365 (rpoC)
Transcription machinery [BR:
muy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SNE26_00365 (rpoC)
DNA repair and recombination proteins [BR:
muy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SNE26_00365 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WPV00214
LinkDB
All DBs
Position
69483..73772
Genome browser
AA seq
1429 aa
AA seq
DB search
MSYKKDNKIKSNFTTITISLASPESILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKRLDLIIYYERYVVIQPGIKEADGINKMDFLTEEEYLDVLDTLPKENQYLDD
KDPQKFVAKMGAEALEELLKRLDLDELSFSLRHQAANETSQQRKNEALKRLQVVEAFRDA
KTRIENNPEWMIVKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLKLHECGLPKDMAAELFKPFIIRKMIERGVVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQSFQPKLVEGKAIQLHPLTCTAFNADFDGDQM
AVHVPLGNAAILEAQILMLASHNILNPANGTPITVPSQDMVLGLYYITKGRKTDETRVVK
GQGLTFYSAEEVIIAYNEKKLDLHAFIKVKALVKERDGKIVSKIIDTTVGRVLFNQHVPV
EVGYINELLTKKSLRDIIGEVVKITGMARAAQFLDDIKELGFKMAFQGGLSFNLKDINIP
AEKVTLIETASKQVDEVMGNYNMGFITNNERYNQIIDIWTRINNRLTANVMDILSNDNQG
FNSVYMMLDSGARGSKEQIRQLAGMRGLMAKPQKSGSGGEIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVGEVDCGTLRGIYTTALKDNEDIVE
PLYDRILGRTTLHDVHDPITNELLATAGQDITEEVAKKIENSPLEGIEIRSVLTCESKRG
VCALCYGRNLASGKRVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESQINAK
FDGIIEFENVRTVTYETAEDGAVDVVLGRSGEFRIIEAGSNKVIVTNNIPYGSYLYVKDG
SKITKGDRICSWDPYNAVIISEFAGIAQFDAVLEGITFREESDEQTGHREKVIIDTRDKT
KNPAIQIADTKGNIIKGYNIPVGAHIAVDEGDKLQTGQVIAKIPRSTGKTRDITGGLPRV
TELFEARNPSNPAVVTEIDGVVTLGGVKRGNREITIESKDGQVKKYLVPLSKHILVQDND
FVKAGMPLSDGSISPADILAIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFEVIVHQMMQ
KVQIEDAGDTRFLEREAVDGWDFMTENDEIYDKKVVTEPGDSTTLKSGQIVSLRRLRDEN
SVLKRRDLKLVEVRDAIPATSSPILQGITRASLGTKSFISAASFQETTKVLNEAAIAGKK
DNMLGLKENVIVGHLIPSGTGLREYENIRVGSQEEFDRLMASKAEELEA
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaggataataaaatcaaaagtaactttaccaccattaccatcagttta
gcctctcctgagtctattcttgagcgttcaagcggtgaagttttaaagccggaaaccatt
aactaccgtacctacaaacctgagcgtgatggtttgttttgcgagcgtatttttggcccg
gttaaggattatgagtgccattgcggtaaatacaaacgcatccgttacaaagggatcgtg
tgcgaccgttgtggtgttgaagtaaccgaaaagaaagtacgtcgtgagcgtatgggccac
atcaacctggtggtgcctgttgcgcatatctggtacttccgttcattaccaaacaaaatt
ggttatttattaggcctgcctactaaaaggctcgaccttattatatactacgagcgttac
gtagttatccaaccgggtattaaagaagcagacggaatcaacaaaatggatttccttact
gaagaagaataccttgacgtgttagatacccttccaaaagaaaaccagtaccttgacgac
aaagatcctcagaaatttgttgccaaaatgggtgccgaggctttggaagaattattaaaa
cgccttgaccttgatgaattatcattcagcctgcgtcaccaggcagcaaacgaaacttca
caacaacgtaaaaacgaagctttaaaacgtttacaggttgttgaggctttccgtgatgca
aaaaccaggatcgaaaataaccccgagtggatgatcgttaagatcgttccggttatcccg
cctgaactgcgtccgttagtaccactggaaggtggccgtttcgctacttcagatttaaat
gacctttaccgtcgtgttattatccgtaacaaccgtttaaaacgtttgatcgagatcaaa
gcaccagaggtaattttacgtaacgaaaaacgtatgttacaggaagctgtggattcgttg
ttcgacaactcacgtaaagttaatgcggtaaaaactgaaggtaaccgtgctttgaaatca
ctttcagatatcctgaaaggtaaacaaggccgtttccgtcaaaacttattaggtaaacgt
gtggattactctgcccgttcggtaattgttgtaggccctaaccttaaattacacgagtgc
ggtttaccaaaagatatggctgccgagttgtttaaaccatttatcatccgcaaaatgatt
gagcgcggtgtggttaaaacagtaaaatctgccaaaaagatagttgaccgtaaagaccca
ttagtttgggatattttggaaaacgtattgaaagggcaccctgtattactaaaccgtgcg
cctacgttgcacaggttgggtatccagtcgttccagccaaaactggttgagggtaaagca
attcaattgcacccattaacctgtacggcattcaacgcggattttgacggtgaccagatg
gccgttcacgtaccacttggtaacgcggcaattttggaagcccagatcctgatgcttgct
tcgcacaacattcttaacccagccaacggtacgccaatcactgtaccatctcaggacatg
gtacttggtttgtattacataaccaaaggccgtaaaactgatgaaacgcgcgtggttaaa
ggccagggtttaactttttactctgccgaagaagtaatcatcgcttataacgaaaagaaa
cttgacctgcatgctttcattaaggttaaagctttagttaaagagcgcgatggcaaaatt
gtaagcaaaattattgatactactgtaggtcgcgtattgtttaaccaacacgtaccggtt
gaagtaggttatattaatgagctgcttaccaaaaaatcactgcgtgatatcattggtgaa
gtagtaaaaatcaccggtatggcgcgtgccgcccagttccttgatgatattaaggagtta
ggctttaaaatggcattccagggtggtttatcatttaacctgaaggatattaatatccct
gctgaaaaagttactttgatcgaaacagcttctaaacaagttgacgaggttatgggtaac
tacaacatgggtttcatcactaacaatgagcgttataaccagatcatcgatatctggaca
cgtatcaacaaccgcttaactgctaacgtgatggacattctgagcaacgataaccagggt
ttcaactctgtttacatgatgcttgactcaggtgcccgtggttcaaaagagcagatccgt
cagcttgcaggtatgcgtggtttgatggctaagcctcaaaaatcaggttcaggtggtgag
atcatcgaaaacccgatcctttcaaactttaaagaaggtttgtcggtattggagtacttt
atctcaactcacggtgcccgtaaaggtttggcggatacagcgttaaaaacagcggatgct
ggttacttaacacgtaggctgcatgacgttgctcaagacatgattgttggtgaggttgat
tgcggtactttaaggggtatctacacaacagcactgaaagataacgaggatattgttgag
ccattatatgatcgtattttaggtcgtactacgcttcatgatgttcatgaccctatcact
aacgaattgttagccacagcaggtcaggatattactgaagaagtagctaaaaagatcgaa
aactcaccactggaaggtatcgagatccgttcggtattaacctgcgaaagcaaacgtggc
gtgtgcgcattgtgctacggccgtaaccttgcaagcggtaaacgcgtgcaaaagggtgag
gctgttggtgtaattgctgcgcagtcgataggtgagccgggtacacagttaacacttcgt
acattccacgtgggtggtaccgcgtcaaacatcgcggctgaatcacagatcaacgctaag
tttgatggtatcattgaatttgagaacgtacgtaccgttacttatgaaactgccgaagac
ggcgctgttgatgttgtattaggccgttcgggcgagttccgcatcattgaagccggaagc
aataaagtgattgttaccaataacattccatacggttcatacctgtatgtaaaagatggc
agcaagatcaccaaaggcgaccgtatctgttcatgggatccgtataacgcggtaattatt
tctgagtttgcaggtattgcccagtttgacgctgtattggaaggtatcactttccgtgaa
gaaagtgacgagcaaacaggtcaccgcgaaaaagtgatcatcgatacaagggataaaact
aaaaaccctgctatccagattgctgatacaaaaggtaatatcattaaaggatacaacatc
ccggtgggcgcccacatcgctgttgatgaaggcgacaaactgcaaacaggccaggttatt
gctaaaattcctcgttcaaccggtaaaacccgggatattacaggtggtttaccacgtgta
accgagctatttgaagcacgtaacccatcaaaccctgctgtagtaaccgaaattgacggt
gtggtaactttaggtggtgttaaacgtggtaaccgcgagatcaccattgaatcaaaagac
ggccaggttaaaaaataccttgtaccgctttcaaaacacatccttgtacaggataatgac
tttgttaaagctggtatgccactgtcagatggttcaatatctcctgcagatattcttgcc
atcaagggccctgcagcggtgcaggaataccttgttaatggtatccaggaagtttaccgt
ttacagggtgtgaagatcaacgataagcactttgaggttatcgttcaccagatgatgcag
aaagttcagatcgaagatgcgggcgatacccgtttcttggaacgtgaagctgttgacgga
tgggatttcatgaccgagaatgatgaaatttatgacaagaaagttgttaccgaaccaggt
gattcaactacattaaaatctggtcagatagtttcattacgccgcttacgcgatgaaaac
tcggtattgaaacgccgcgaccttaaactggttgaagtgcgtgacgctatcccggcaaca
tcaagcccgatactgcaaggtatcaccagggcatcgttaggtaccaagtcgtttatctcg
gcagcgtcgttccaggaaactaccaaagtactgaacgaagcagctatcgcaggtaaaaaa
gacaacatgcttggccttaaagaaaacgttatcgtaggtcacttaataccttcaggtacc
ggtttacgcgagtatgaaaatatccgtgtaggctcacaggaagaatttgaccgcctgatg
gcttcaaaagcagaagagctggaagcttaa
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