Mucilaginibacter sp. cycad4: SNE26_10580
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Entry
SNE26_10580 CDS
T10709
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
muy Mucilaginibacter sp. cycad4
Pathway
muy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
muy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SNE26_10580 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
muy03019
]
SNE26_10580 (recQ)
03400 DNA repair and recombination proteins [BR:
muy03400
]
SNE26_10580 (recQ)
Enzymes [BR:
muy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SNE26_10580 (recQ)
Messenger RNA biogenesis [BR:
muy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SNE26_10580 (recQ)
DNA repair and recombination proteins [BR:
muy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SNE26_10580 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
HTH_40
WHD_KicB
Motif
Other DBs
NCBI-ProteinID:
WPV02965
LinkDB
All DBs
Position
complement(2627285..2629477)
Genome browser
AA seq
730 aa
AA seq
DB search
METKKSLFDNLQNFFGFDNFKGEQEAIITNILAGNDTFVIMPTGGGKSMCYQLPALMSDG
TAIVISPLIALMKNQVDQLRAFGGSDSIAHFLNSSLTKSEIGKVKEDVLAGKTKLLYVAP
ESLTKQENIDFLRLNHVSFVAVDEAHCISEWGHDFRPEYRKIRQVISNIGENIPIIALTA
TATPKVQQDIQKNLQMNNATVFKSSFNRGNLFYEVRAKRNVIKEIVKFVKQNQGKSGIVY
CLSRKKVEEVAEALNLNGVRALPYHAGLDPKVRAETQDKFLMEDVDVIVATIAFGMGIDK
PDVRYVIHHDVPKSMEGYYQETGRAGRDGGEGVCVAFYSEKDIDKLQKFMKDKPVSEREI
GTQILKEVIDYCESSVCRRKQLLHYFGENFNEAGCNNMCDNCCTHKEHFDGEEHLHRTLS
LIKHIGEKFDDHHIISILMGEENAQIKNYEHDQLDYYGSGKEQGKNLWNSLLRQALLNNY
ISKDIDQYGLLRLTKSGIGFIENPHSIRFVLNKVMEAADDDSDDDGPKQSGGALDTQLLQ
MLKELRKKLAKQKGLPPFVIFQDPSLEEMCTHYPINTEELKQISGVGAGKALKFGKPFTD
LIQKYVEDNDIDRPIDMVIKSAANKSALKVFIIQNIDRHLNLDDIAASKGLTYEEILKEV
ETIVNSGTKLNLNYYIDEVIDEDKQEEVFDYFRTAEADSIDEALAELGSDDYTREEVQLM
RIKFMSELGN
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atagaaacaaagaaatcgctatttgacaatctccagaattttttcgggtttgataatttt
aagggagaacaggaagcgataataaccaacatcctggccggtaatgatacattcgttatt
atgcctaccggtggtggcaaatcgatgtgttatcagttaccagctttgatgagcgatggc
acggcaatcgtaatttcaccattgatagccctgatgaaaaatcaggtagatcagctcagg
gcgtttggaggatcagatagtatagcccactttttaaattcatcacttacaaaatcagag
ataggcaaggttaaagaagatgtactggcagggaaaaccaagttattgtacgtggccccc
gaatcgttaaccaagcaggaaaatattgatttcttacgtcttaaccacgtatcgttcgtg
gcggtagatgaagctcactgtatttcggagtgggggcatgatttcaggcccgaataccgt
aaaatacgccaggtgatcagtaatataggcgaaaatatccccataattgctttaacggct
acagctactccaaaagttcagcaggatattcaaaaaaacctgcaaatgaataacgcaacc
gtatttaaatcgtcatttaaccgcggtaacctgttttatgaagtaagggcgaagcgtaac
gtcatcaaagagattgtaaaatttgtaaagcaaaaccagggcaagtcgggaattgtgtat
tgtcttagccgcaaaaaggttgaggaagtagccgaggcgcttaaccttaacggggtaagg
gcgctgccgtatcatgcagggcttgatcctaaagtgcgtgcggaaacgcaggacaaattc
ctgatggaagatgttgacgttattgttgctactattgcatttggaatgggtatcgataaa
cccgatgttcggtatgtaatacaccatgatgtgcctaaaagcatggaaggctattaccag
gaaaccggaagggccgggcgtgacgggggagaaggtgtttgcgtggctttttattcggaa
aaggatattgataagcttcagaaattcatgaaagacaagcctgtttcggaacgggaaata
ggcacccagatactcaaggaggttattgattattgcgagtcgtcggtttgccgccgtaaa
cagttgttgcattattttggcgaaaactttaatgaagcgggctgtaataacatgtgcgat
aattgctgcacccataaagaacattttgatggcgaggagcacctgcacaggacattaagt
ttaattaagcatattggcgagaagtttgacgaccatcacatcatcagcatattaatgggt
gaggaaaatgctcagatcaaaaattatgagcatgaccagcttgactattacggttcgggc
aaagaacaaggtaaaaatctttggaactcgcttttaaggcaggcattactcaataattat
atttcaaaggatattgatcaatatgggcttttgaggctcactaaaagcggcattggcttt
atcgagaatccgcacagtatccgttttgttttgaataaggttatggaggctgctgacgat
gacagcgatgatgacgggccaaaacaaagcggcggtgcacttgatacccagttgctgcaa
atgcttaaagaactgcgtaaaaagctggccaagcaaaaaggactgccgccgtttgtaata
ttccaggacccttcgttagaagagatgtgcacccattaccccatcaacaccgaagagctt
aaacaaatttcgggggttggcgcaggcaaggcgctgaagtttggtaaaccttttaccgat
ttgatccagaaatacgtggaggataatgatatcgatcggccaattgatatggtgatcaaa
agtgctgccaataaatcggcgcttaaagtgttcattattcaaaatatcgacaggcattta
aaccttgatgatattgccgcttcaaaaggccttacttatgaggagatcctgaaagaggtt
gaaactattgttaactcaggaaccaagcttaacctgaattactatattgatgaggttatt
gacgaggataaacaggaagaagtatttgattatttccgcactgcagaagctgattctatc
gatgaagccttagccgaactgggcagcgatgattacacccgtgaagaggtgcagttaatg
cgtattaaattcatgtcggagttggggaactaa
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