Mucilaginibacter sp. cycad4: SNE26_13490
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Entry
SNE26_13490 CDS
T10709
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
muy Mucilaginibacter sp. cycad4
Pathway
muy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
muy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SNE26_13490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
muy03019
]
SNE26_13490
Enzymes [BR:
muy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SNE26_13490
Messenger RNA biogenesis [BR:
muy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SNE26_13490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
DUF7823
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WPV02795
LinkDB
All DBs
Position
complement(3361218..3362570)
Genome browser
AA seq
450 aa
AA seq
DB search
MAVNFEDFNFNRQILNAIADAGYTEATPIQQKAIPPILNGQDVMGIAQTGTGKTAAYVLP
IIMKLKYAQGEHARALIISPTRELAMQIEENVKIFAANTDLRVVVLYGGIGPKTQIEQIK
KGVDIIVASPGRFMDIYLAGHIVTKTLQVLVLDEADKMMDMGFMPQINRILEVVPVKRQN
LLFSATMSEKVHQLSANFLEFPTVIEVTPQATPAQTVNQHLYHVPNIKTKINLLKKLLDN
EGDITKLIVFCKTRAVAEDVFKFLTRKFGEQDVKVLHANKGQNTRINSINSFKNDEVKIL
VATDVASRGIDVSHVSHVINFDVPVVIEDYVHRIGRTGRALQSGEAITFATPSEEYYIRK
IEKLIKQTIPVENIPGDVFIEETPYEERQDQAREIDMQKRKEDPDFKGAFHEKKSLNQRK
KFDANKDKAKYGSKAARQGTGRSSKSKKRH
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggctgtaaactttgaagattttaattttaaccggcaaatcctgaacgcgatagccgat
gccggttataccgaagctacgcctatccagcaaaaagctatcccgcctattttgaacggg
caggatgtgatgggtatagcgcaaacaggcaccggtaaaacggcggcctacgtattgccc
attatcatgaagcttaaatatgcacagggtgaacatgcccgggcgctcatcatttcgcct
acgcgtgagctggccatgcagattgaagaaaatgtaaaaatttttgctgctaatactgat
ctgcgtgtggtggtgctttatggcggtatcggccctaaaacacaaattgagcaaatcaaa
aaaggggtagatatcattgtggcttctccaggccgttttatggatatttaccttgccggg
catatcgtaaccaaaacactgcaggtactggttttggatgaggccgataaaatgatggat
atgggttttatgccccagataaaccgcatcctggaagtggtgccggtaaaaaggcaaaac
ctgcttttttcggctacgatgagcgaaaaggtacaccagctttcggccaatttcctggag
tttccgacggttattgaagttaccccgcaggctacgccggcacaaacggttaaccagcat
ttataccatgtgcccaatatcaaaaccaaaataaacctgctcaaaaaactgctcgataat
gagggcgatatcaccaagctgatagttttctgtaaaacccgggcggtagccgaggatgtt
tttaaattcctgacccgcaaatttggcgaacaggacgtgaaggtattacacgccaataaa
gggcaaaatacgaggatcaattccatcaattcgtttaaaaacgatgaagtgaagatcctg
gtagctactgatgtggcatcgcgcggtattgatgtgagccatgtaagccatgtgatcaat
tttgacgtgccggtggttatcgaggattatgtgcacaggattggccgcacgggccgtgca
ttacaatcaggcgaggccattactttcgctacaccgtccgaagaatactatatccgcaag
atagaaaagcttatcaagcaaactattcctgtcgaaaacattccgggcgatgtgtttatt
gaggaaaccccttatgaagaacgccaggaccaggcccgggaaatagatatgcaaaagcgc
aaagaagaccccgattttaaaggcgctttccacgaaaagaaatccctcaaccagcgtaaa
aagtttgatgccaataaagacaaggccaaatatggctcaaaggcagcaaggcagggtaca
ggccgatcatccaaaagcaaaaaaagacactaa
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