Mucilaginibacter sp. cycad4: SNE26_26085
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Entry
SNE26_26085 CDS
T10709
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
muy Mucilaginibacter sp. cycad4
Pathway
muy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
muy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SNE26_26085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
muy03019
]
SNE26_26085
03009 Ribosome biogenesis [BR:
muy03009
]
SNE26_26085
Enzymes [BR:
muy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SNE26_26085
Messenger RNA biogenesis [BR:
muy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SNE26_26085
Ribosome biogenesis [BR:
muy03009
]
Prokaryotic type
rRNA helicases
SNE26_26085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF2278
AA_kinase
Motif
Other DBs
NCBI-ProteinID:
WPU99488
LinkDB
All DBs
Position
6302531..6304393
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AA seq
620 aa
AA seq
DB search
MNNPFIELGIRHDIVNAISELGFENPTPIQEQSIPVLLTGSNDFVGLAQTGTGKTAAFGL
PLLELLDFEENHPQALVLCPTRELCLQIANDIKNYSKKMNNVHVVAVYGGASIMDQLRQI
KRGVQIVVATPGRMLDIINRKAIDFSAVKYVVLDEADEMLNMGFQEDIDSILSTTPEEKK
TWLFSATMPAEVRRIAKKYMDNPFELTMGAKNTGNANIEHEYYIVRARDKYAAFKRIVDF
NPDIFGIVFCRTKIETQEIAESLIKDGYNADSLHGDLSQQQRDKVMKRYRERSLQLLIAT
DVAARGIDVNDVTHVINYSLPDEIENYTHRSGRTARAGKTGVSISIVNAKELGKIRQIER
VIGKKFVKAEIPTGFDVCEKQLFSIVHKVHNVTVNEEQIEQYLPRIYDEFKDFTKEDFIK
RFASIEFNRFLDYYKNAPDLNASVEEGRNRFEERGERGNGVRGNFTRLFINLGSVDEFNR
GDLLGYICNTTKISGRTVGKIDVKGVYSFFEVQNEDVDKVMASFKEAEYKGRPVRIEISG
EGTSDNRGSGERREGGYRGGDRREGGYRGGDRREGGYRGGERREGGGYRGNEKREHNGGG
GFRDFSGKPREDRPERRRRF
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacccatttattgaactgggaatccgtcatgatattgttaatgccatctctgag
ttaggatttgaaaatcctacaccaatccaggagcagtcaatcccggtattgttaacaggc
agcaacgattttgtcggattagcccaaaccgggaccggaaaaactgctgcctttggccta
ccattgttggaactgcttgatttcgaagaaaatcatccacaggcacttgttttatgccca
acacgcgaactttgtttacaaatcgcgaacgacatcaagaattactccaaaaaaatgaac
aacgtacacgttgttgccgtttatggaggtgcaagcattatggatcaattacgccagatc
aaacgcggcgttcagatcgtagtagctacaccaggtcgtatgcttgatatcataaaccgt
aaggctatcgacttttcggctgtgaagtatgtagtattggatgaggctgacgaaatgctc
aatatgggctttcaggaagacattgatagtatcttatctaccacacccgaagagaaaaaa
acctggctattctcggccaccatgcctgccgaagttaggcggattgccaaaaagtacatg
gacaatccgtttgagcttactatgggcgcaaaaaacaccggcaatgccaatatcgagcac
gagtactatatagtacgtgcacgtgacaagtatgccgcttttaaacgtattgttgatttt
aaccctgatatttttgggatcgtattttgccgtaccaaaattgaaactcaggaaattgct
gaatcactgatcaaagacggctacaatgccgattcattgcacggtgacctttcacagcaa
caacgcgataaagtgatgaaacgctaccgcgagcgcagcctgcaattgttaattgctact
gacgttgccgcccgtggtatcgacgttaatgacgttacgcacgttatcaattattcatta
cctgacgaaattgaaaattacacccaccgtagcggtcgtacagcccgtgccggtaaaaca
ggtgtatctatctctatcgtaaacgctaaagaattaggcaagattcgtcagattgagcgt
gttattggtaaaaagtttgtaaaagccgaaatcccaacaggtttcgatgtttgcgaaaaa
caattattctctatcgttcacaaagtacataacgttactgtaaacgaagaacagattgag
cagtacctgccgcgtatttacgacgagtttaaagatttcaccaaggaggatttcattaaa
cgttttgcttcaattgaatttaaccgtttccttgattactataaaaacgctcccgacctg
aatgccagcgttgaagaaggccgtaacaggtttgaagaacgcggcgaacgcggcaatggc
gtaagaggcaactttacccgtttgtttataaacttaggttctgttgacgagtttaaccgt
ggcgatttgctgggttacatttgcaacacaaccaaaatcagcggtcgtaccgtaggtaag
atcgatgttaaaggtgtgtactcattctttgaagtacagaacgaggacgttgataaagtg
atggccagcttcaaagaagccgaatataaaggtcgccctgtgagaatagagatctctggc
gaaggtaccagcgataaccgtggcagtggcgaacgccgcgaaggcggatatcgcggaggt
gatcgtcgcgaaggaggataccgaggtggtgatcgtcgtgaaggcggataccgtggtggc
gaacgtcgtgaaggcggtggctatcgtggtaacgaaaagcgcgaacataatggtggcggt
ggtttccgtgatttttcaggcaaaccccgtgaagatcgcccggaacgcagaaggagattt
taa
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