Mucilaginibacter sp. cycad4: SNE26_27050
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Entry
SNE26_27050 CDS
T10709
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
muy Mucilaginibacter sp. cycad4
Pathway
muy03420
Nucleotide excision repair
muy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
muy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SNE26_27050
03430 Mismatch repair
SNE26_27050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
muy03400
]
SNE26_27050
Enzymes [BR:
muy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SNE26_27050
DNA repair and recombination proteins [BR:
muy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SNE26_27050
MMR (mismatch excision repair)
Other MMR factors
SNE26_27050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
DUF3799
Dna2
Motif
Other DBs
NCBI-ProteinID:
WPU99679
LinkDB
All DBs
Position
complement(6537977..6541147)
Genome browser
AA seq
1056 aa
AA seq
DB search
MQPTFNKYNAKFQEALAGLNPEQLAAVNKMDGPVLVVAGPGTGKTQILAARIGKILTDTD
ALPSEILCLTYTDAGAVAMRKRLFEFIGPDAYRINIYTFHAFCNEIIQENLEYFGKLNLE
SLSDLESAMLFRELVDEFPNDHLLKRFTGDIYYDVPRLKSLFSTMKRENWNAEMIEQAVN
DYLEDLPNREEFIYKRANAKAGIKIGDPKQKDIDAAHDVMKKLLAAVGEYQNYTEKMKAR
GRYDYDDMIIWVLRAFRDNEEILRRYQERYQYILVDEFQDTSGSQNELLRFLLNYWDTPN
VFVVGDDDQSIFKFQGANMKNILDFANDYVDTLYTVVLKHNYRSSQQILDISKALIDNNF
ERLTSQLNLDKALKSSHPRFNNLLVEPVIREYENPDKELVDVSLQIKQLVFDGVPPGEIA
VIYRNHNQVEEMIKFLDVQKIQVNSKRKIDVLTQPFGEKIINILRYLAMELDSPYSGDEL
LFEIMHYDFFNIPPIEIAKASVAVFKENFGTLAYNQPKTSIRRYVSEMRPPKQADLFNPD
QQQEMRYLVSNVDYLLKEAVSVTLQQLFQSVIAKMGILKYIMQQQDKGSYMQMLTSFFDF
LKDESRKKPDISLDDLISTIEMMKKHQIRLELNQSIFSENGVNFLTAHGSKGLEFEYVFF
IGCDKRTWDSKGRNSGFSYPDTLTRSAADEIAQKEEARRLFYVAVTRAKQHLMISYAAKD
RKDKDQEASQFIGEILASTNMQVQYPKVDAMDMIEFQATQFSEAEKPKVELLDKNYINQL
LQNYTLSVTHLSSYLDCPLRFYFQCLIRVPSGKSPAATFGQAVHWALNKTYRQLKDNDNE
FLSTESFMREFRWYMARNRDSFTKDEFKLRSAYGEKILPPYYEQNVPHWNKIAVTERPIK
NIEVHGVPIKGNLDKIEFDGKQATVVDYKTGKVKNAKEKLMRPTNDLPNGGDYWRQAVFY
KILVDHDRSNDWEVVSTVFDFVEPVADNEYYREKFVITPDDMETVTGQITETYAKIMAHD
FSTGCGKKECNWCHFVKSNFKQADEILGIVADEEGE
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgcaacctacattcaataaatataacgccaaattccaggaagctttagccggtttaaac
cctgagcagttggccgcggttaataaaatggatggccctgtgctcgttgtggccggtccc
ggtacaggcaaaacccagatcctggctgcccgcataggcaagatcctgaccgataccgat
gccctgccaagcgagatcctgtgcttaacgtataccgatgccggcgctgtagccatgcgc
aaacgcctttttgaatttatcggtcctgatgcttaccggattaatatatatacgttccac
gctttttgtaacgaaatcatccaggaaaatctggagtatttcggaaaactgaacctggaa
tcgctttccgacctggaatcggccatgctgttccgtgagctggttgatgagttcccgaac
gatcacctgcttaagcgctttaccggcgatatttattacgacgttccccggcttaaaagc
ttgttcagcactatgaagcgggaaaactggaatgccgaaatgattgagcaggccgtaaat
gattatctcgaagatttacctaatcgcgaggagtttatttataaacgggctaatgccaaa
gcaggcatcaagattggtgaccccaagcaaaaagatatcgacgccgcgcacgatgtgatg
aaaaaactgctggctgctgttggagagtaccaaaactatacagaaaaaatgaaagcgcgc
ggccgttatgattatgacgacatgatcatttgggtgctgcgcgcgttccgcgataatgag
gagatcctgcgccgctaccaggagcgttatcaatatattttggttgatgagttccaggat
accagcggatcgcaaaacgagttactccgtttcctgcttaattattgggataccccgaac
gtttttgtggtaggcgatgatgatcagtcgatcttcaaatttcagggggccaacatgaaa
aacatccttgattttgccaatgactatgtagatacactatacaccgtagtgctaaaacat
aactatcgctccagtcagcagatcctcgatatttcaaaagcgcttatcgacaataatttt
gagcgattgaccagtcagcttaatttagataaagctttaaaatcgtcacatccacgtttt
aataacctgttggtcgagccggtgatccgcgaatacgaaaacccggataaagagctggtt
gatgtatcgctgcaaataaaacagttagtgtttgatggcgtacctccgggcgaaatagcg
gtaatctatcgcaaccacaaccaggttgaagaaatgatcaaatttctggatgtgcaaaag
atccaggtaaatagcaaacgtaaaattgatgtactcacccaaccttttggcgaaaagatc
atcaacatactgcgctaccttgccatggagcttgactcgccatacagcggggatgaattg
ctgttcgagatcatgcactatgatttctttaacatcccccctattgaaattgccaaagca
agcgtggcggtatttaaggaaaactttggcaccctggcctacaatcagcctaaaacttct
atccgccgttacgtaagcgagatgaggccacccaagcaagcagatctttttaaccccgat
cagcagcaggaaatgcggtacctcgttagcaatgttgactacctgcttaaagaagcagta
agcgttacgctgcagcagcttttccaaagtgtgatagctaaaatgggtatcctgaaatac
attatgcaacaacaggataaaggcagttacatgcaaatgctcaccagcttttttgatttt
ctgaaagatgaaagtcgtaaaaagcctgatatcagcctggatgaccttatctcgactatc
gagatgatgaagaagcaccagatccgcctggagcttaaccaaagtattttttcggaaaac
ggcgtcaacttccttaccgcgcacggctcaaaagggcttgagtttgaatatgtgtttttt
attggctgcgacaaacgtacctgggacagcaagggccggaacagcggtttcagctatccc
gacacacttacccgctccgccgctgatgaaatagcgcagaaggaggaagcccgtcgcctg
ttttatgtggcagtaacacgcgccaagcagcacttgatgatctcatacgccgctaaagac
aggaaggacaaagatcaggaggcaagccagtttataggcgagatattagccagcaccaat
atgcaggtacaataccctaaagtggacgctatggatatgatcgagttccaggcaacccaa
ttcagcgaagccgaaaaaccaaaggtagaactgctggataaaaactatattaaccagctg
ctgcaaaactatacattatcggtaacccacctgagcagttacctggattgcccgctgcgc
ttttattttcagtgtttgatcagggtgccatcgggtaaaagtccggcggcaacttttgga
caggcggtacactgggcacttaacaaaacttacaggcagttgaaggataatgacaatgag
tttttgagtacggaaagtttcatgcgcgagtttaggtggtacatggcccgcaatcgcgat
tcttttactaaagatgagtttaaactgcgctcggcctatggagaaaagatcctgccgcca
tactatgaacaaaatgtaccgcactggaacaaaatagcggtaaccgagcgccctatcaaa
aatattgaagtacacggcgtacccattaaaggcaacctggataaaattgaatttgacggt
aagcaagccacagttgtggattacaaaacgggtaaagtaaaaaatgccaaagaaaaattg
atgcgcccaaccaatgatttgcccaatggaggtgattactggcgccaggcagttttttac
aaaatccttgttgatcatgaccgcagcaacgactgggaagttgtaagcaccgtatttgat
tttgttgaacccgtagccgataacgaatattaccgcgaaaaatttgtgataacacccgat
gacatggaaaccgtaaccggccagatcaccgaaacctacgccaaaatcatggcacacgat
ttcagcaccggctgcggcaaaaaggaatgcaactggtgtcattttgtaaaaagcaatttt
aaacaggccgatgagattttaggaattgttgcggatgaggaaggggaataa
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