Mycolicibacterium vanbaalenii: Mvan_4470
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Entry
Mvan_4470 CDS
T00449
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mva
Mycolicibacterium vanbaalenii
Pathway
mva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mvan_4470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mva03019
]
Mvan_4470
03009 Ribosome biogenesis [BR:
mva03009
]
Mvan_4470
Enzymes [BR:
mva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mvan_4470
Messenger RNA biogenesis [BR:
mva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mvan_4470
Ribosome biogenesis [BR:
mva03009
]
Prokaryotic type
rRNA helicases
Mvan_4470
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABM15245
UniProt:
A1TDJ5
LinkDB
All DBs
Position
complement(4798616..4800310)
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AA seq
564 aa
AA seq
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MTSSNAETESADLTFADLQIHPAVLQAVADVGYETPSPIQAATIPAILDGSDVVGLAQTG
TGKTAAFAIPILSKIDTDSRNTQALVLAPTRELALQVAEAFGRYGAHLRVNVLPIYGGAS
YVPQLSGLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERIL
ADTPEYKQVALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMD
ALTRLLEVEQGDAMIVFVRTKQATEEVAEKLRSRGFAAAAINGDIPQAVRERTISQLKDG
TIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRER
HLLGAIERVTRQKLVESELPSVEDVNEKRVAKFRDSITDALEKPGIDLFRTLIEGYERDH
DVPMADIAAALALQSRNGEEFLMTEPPPEKRRERRERDGRDGDDRGPRKPRERRSDLATY
RIAVGKRHKVAPGAIVGAIANEGGLHRSDFGHITIKVDYSLVELPAKLSHKTLKALENTR
IQGQLIHLEPDRGPKPHRGRPQSK
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgacctcctcgaatgcggaaacagagtccgctgatctcacttttgcggacctgcagatc
caccccgcggtgctgcaggccgtggccgacgtcggctacgaaacgccctcacccatccag
gcggcgaccatcccggcgatcctggacggctccgacgtcgtcgggctcgcgcagaccgga
acgggtaagaccgcggctttcgcgatcccgatcctgtccaagatcgacaccgacagccgt
aacacccaggcgctggtgctggcgccgacccgcgagctcgcgctgcaggtcgcggaggcc
ttcgggcgctacggcgcccacctgcgcgtcaacgtgctgccgatctacggtggagcgtcc
tacgtcccgcagctgtccgggctcaagcgcggtgcgcaggtcgtggtcggcaccccgggg
cgggtgatcgaccacctggagaagggcagcctcgacctctcacacctggactacctggtg
ctcgacgaggccgacgagatgctgcagatggggttcgccgaggacgtcgagcggatcctc
gccgacacccccgagtacaagcaggtcgcgctgttctcggcgacgatgccacccgccatc
aagaagatcaccgccaagtacctgcacgacccggtggaagtgaccgtcaagtccaagacg
caaaccgccgagaacatcacccagcgctacttcctggtgtcgtatccgcgcaagatggac
gcgctgacccggctgctcgaagtcgagcagggcgacgcgatgatcgtgttcgtccgcacc
aagcaggccaccgaggaggtcgccgagaagctgcgctccagggggttcgctgcggcggcc
atcaacggcgacatcccgcaggcggtccgcgaacgcaccatctcgcagctcaaggacggg
accatcgacatcctggtcgccaccgacgtcgcggcccgcggcctcgacgtcgagcgcatc
tcgcacgtggtgaacttcgacatcccccacgacccggagtcctatgtgcaccgcatcggg
cgcaccggacgcgcaggccgatcgggcaccgcactgctgttcgtgacgccgcgcgaacgc
cacctgctcggcgcgatcgagcgcgtgacccggcagaagctggtcgagtccgaactgccg
tcggtcgaggacgtcaacgagaagcgggtggccaagttccgcgactcgatcaccgacgcg
ctggagaagccgggcatcgacctgttccgcacgctgatcgagggttacgagcgcgaccac
gacgtcccgatggccgacatcgctgcggcgctggcactgcagagccgcaacggcgaggag
ttcctgatgacggaaccgccgccggagaagcgccgcgagcgtcgggaacgcgatggccgc
gacggggatgaccggggaccgcgcaagccgcgcgagcgccgcagcgatctcgcgacctat
cggatcgcggtcggcaagcggcacaaggtcgcgcccggcgccatcgtgggcgccatcgcc
aacgagggcggcctgcaccggagcgacttcggccacatcacgatcaaggtcgactactcg
ctggtggaactgcccgcgaagctgtcgcacaagacgttgaaggccctggagaacaccagg
attcagggtcagctgatccacctggaacccgatcgcgggccgaaaccgcaccggggtcgg
ccccagtcgaagtga
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