Mycolicibacterium vanbaalenii: Mvan_4777
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Entry
Mvan_4777 CDS
T00449
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mva
Mycolicibacterium vanbaalenii
Pathway
mva03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mvan_4777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mva03400
]
Mvan_4777
Enzymes [BR:
mva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mvan_4777
DNA repair and recombination proteins [BR:
mva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mvan_4777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
DUF7692
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABM15550
UniProt:
A1TEF0
LinkDB
All DBs
Position
complement(5113925..5117563)
Genome browser
AA seq
1212 aa
AA seq
DB search
MTVSGTLHVHTPIAGLVDLALRDPALQEIARRAGDRPADLNLVGPASARVFVASALAQPG
LLLVVTATGREADDLTAELRGVFGDAVALFPSWETLPHERLSPGVDTVGARMMLLRRLTH
PDDARLGPPLRIVVTTARSLLQPMAPDLAEVDPVTLTVGGEADFDAVVARLVDLAYSRVD
MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIEIDTLIAV
PCRELLLTAEVRDRAAALASEHPVLENSVTGSVPDMLAKLAEGIPVDGMEALLPLLRPSD
FATLPDHLPEGTPLLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDVPIDIEALGVS
GYVGYGDARDAARAGGHPWWTLSQLDSGAGESTALDIRPAPSARGQQHNLDEIFAMLRAH
VATGGFGVVVTPGSGTAMRVVEQLSESDIPATVLEPGAVPGEGVVGVIKGPLHDGVVIPG
ANLVVITETDLTGNRAAATEGKKLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERV
IGGARREYLVLEYASAKRGGGSDRLYVPMDSLDQLSRYVGGEAPTLSRLGGSDWANTKTK
ARKAVREIAAELVALYAKRQASAGHAFAPDTPWQREMEDAFGFTETVDQLTAITEVKSDM
EKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMTGF
PVTVKGLSRFTDPAESRATIEGMKDGSVDIVIGTHRLLQTGVTWKDLGLVIVDEEQRFGV
EHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK
QVAAALRREMLRDGQAFYIHNRVRTIDSAAAKVRQLVPEARVVVAHGQMPEEQLEKTVEG
FWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY
PPEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYV
RLVGEAVEAYRAAADGKTVAAPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEAYRRLAAAP
DDAAVDAVIEELVDRYGPLPEPAQRLVAVARLRLLARAHGVTEIGAPSATTLRISPMTLP
DSAQLRLKRLYSGANYRATTSTVQVPVPRAGSGVGSPRIRDLELVAFVAGLLLAIDGKPG
EEVDITKFGGGA
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtatcggggaccctccatgtccacaccccgatcgcgggcctcgtcgatctggcg
ctgcgtgatcccgccctgcaggagatcgctcgtcgtgccggcgaccggcccgccgatctc
aacctcgtcggcccggccagcgcacgcgtgttcgtggcgtccgcgctcgcccagccgggg
ctgctgctggtcgtcaccgccaccggccgcgaggccgacgacctgaccgccgagttgcgc
ggcgtcttcggcgacgcggtggcgttgttcccgtcgtgggagacgttgccgcacgagcgg
ctctcacccggcgtcgacaccgtcggtgcccgcatgatgctgctgcgccgcctcacccac
cccgacgacgcgcggctcggcccgccgctgcggatcgtggtgacgactgcgcggtcgctg
ctgcagccgatggcccccgatctggccgaggtggatccggtcacgctcaccgtcggcggc
gaggcggacttcgatgccgtggtcgcgcggctcgtggatctggcctacagccgcgtcgac
atggtcggcaaacgcggtgaattcgcggtccgcggaggcattctcgacgtcttcccgccc
acggccgagcaccccgtacgtgtcgagttctggggtgacgaggtctccgagatgcggatg
ttctcggtggccgaccagcgttcgatccccgagatcgagatcgacacgctgatcgcggtg
ccgtgccgtgaactgctgctgaccgccgaggtccgcgaccgtgccgccgcactggcgagc
gaacacccggtcctggagaacagcgtgaccggcagcgtgcccgacatgctggccaagctg
gccgagggcatcccggtcgacggcatggaggcgctgcttccgctgttgcgtcccagcgac
ttcgccacgctgcccgaccacctacccgaaggcaccccgctgctggtgtgcgatccggag
aaggtccgcacccgcgccgccgatctgatcaagaccggccgcgagttcctggaggcgtcg
tggtcgaccgcggcggtcggcggggacgtgcccatcgacatcgaggcgctcggcgtgtcg
ggctacgtcggttacggcgacgcgcgcgacgcggcccgcgccggcgggcatccgtggtgg
acgttgagccagctcgacagcggtgccggcgagtccacggcgctcgacatccggcccgca
ccgtcggcgcgcggccagcagcacaatctcgatgagatcttcgcgatgctgcgcgcccac
gtcgcaaccggcgggttcggggtcgtcgtcacccccgggtccggcaccgcgatgcgggtc
gtcgaacaactctccgaatccgacatccccgcaacggttctggagccgggtgcggtgccg
ggtgaaggtgtcgtcggggtcatcaaggggccgctgcacgacggtgtggtgatcccgggc
gccaacctcgtggtgatcaccgagaccgacctgaccggtaaccgggccgcggccaccgag
ggcaagaagctggcggccaagcgccgcaacgtcgttgacccgctggcgctgaccgcgggc
gacctggtggtgcacgaccagcacggcatcggccgcttcgtggagatgaccgagcgggtg
atcggcggggcgcgacgcgagtacctggtgctggagtacgcgtcggccaagcgcggcggt
gggtccgatcggctgtacgtgccgatggattcactggaccagctgtcccgctacgtcggt
ggcgaggcgccgacgctgagccgcctcggcggcagcgactgggccaacacgaaaaccaag
gcgcgcaaagcggttcgcgagatcgccgccgagctcgtcgcgctgtacgccaaacgtcag
gcctcggccgggcacgcgttcgccccggacaccccgtggcagcgcgagatggaagacgcg
ttcggcttcaccgagaccgtcgaccagctgaccgcgatcaccgaggtgaaatccgacatg
gagaagccggtcccgatggaccgggtgatctgcggtgacgtcggctacggcaagaccgag
atcgcggtgcgcgcggcgttcaaggcggtgcaggacggcaagcaggtcgcggtgctggtg
ccgaccacgctgctggccgatcagcatcttcagacgttcaccaaccggatgaccggtttc
ccggtcacggtcaaggggctctcgcggttcaccgacccggccgagtcccgcgccacgatc
gagggcatgaaggacgggtccgtcgacatcgtgatcggcacccaccggctgctgcagacg
ggtgtgacgtggaaggacctcggcctggtcatcgtcgacgaggagcagcggttcggcgtc
gagcacaaggagcacatcaagtcgatgcgcacccacgtcgacgtgctgaccatgagcgcc
accccgatcccgcgcaccctggagatgagcctggccggtatccgggagatgtcgacgatc
ctgaccccgcccgaggagcgctacccggtgctgacctacgtcggcccgcacgacgacaaa
caggtcgccgcggcgctgcgccgcgagatgctgcgcgacgggcaggcgttctacatccac
aaccgggtgcgcacgatcgactcggccgccgccaaggtgcgccagctggtacccgaggcc
cgggtggtggtcgcgcacgggcagatgcccgaggagcagctggagaagaccgtcgaaggg
ttctggaaccgcgagtacgacattctggtctgcacgacgattgtcgagacgggcctggac
atctcgaacgcgaacacgctgatcgtcgagcgcgccgacacgttcgggctgtcgcagctg
catcagctgcgcggccgggtcgggcggtcgcgtgaacggggttatgcgtacttcctgtac
ccgccggaggttccgctgaccgagacggcctacgaccggctcgccacgatcgcccagaac
aacgagttgggcgcgggcatggcggtggcgatgaaggacctcgagatccgcggcgcggga
aacgtgttgggggccgagcagtccgggcacgtcgccggtgtgggcttcgacctgtacgtg
cgtctggtgggcgaggccgtagaagcatatcgagccgccgcggacgggaaaaccgttgcg
gcgccggaggaaccgaaggacgtcaggatcgacctgccggtcgatgcgcacctgccgccg
gactacatcggcagcgacaggctgcggttggaggcctaccgccggttggcggccgcaccc
gacgacgccgccgtcgacgcggtgatcgaggaactcgtcgaccggtacggtccgcttccc
gagccggcgcagcgactggtcgcggtcgcgcggctgcggctgctggcgcgcgcgcacggc
gtcaccgagatcggcgccccgtcggcgacgacgctgcgcatctcgccgatgacgcttccg
gattcggcacagctgcggctcaagcggctctattccggtgcgaactaccgcgccaccacc
tccaccgtgcaggttccggtcccgcgcgcgggcagcggggtggggtcgccgcggatccgc
gatctggagctggtggccttcgtggcgggattgctgctggccatcgacgggaaaccgggc
gaggaagttgatataaccaagttcggaggtggcgcatga
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