Microcoleus vaginatus: D0A34_03025
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Entry
D0A34_03025 CDS
T08026
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mvag
Microcoleus vaginatus
Pathway
mvag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0A34_03025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvag03019
]
D0A34_03025
03009 Ribosome biogenesis [BR:
mvag03009
]
D0A34_03025
Enzymes [BR:
mvag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D0A34_03025
Messenger RNA biogenesis [BR:
mvag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D0A34_03025
Ribosome biogenesis [BR:
mvag03009
]
Prokaryotic type
rRNA helicases
D0A34_03025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
HEM4
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UNU17969
LinkDB
All DBs
Position
733042..734529
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AA seq
495 aa
AA seq
DB search
MNLLFEGLGLSEELVLHLETLGFTEPTPIQVQAIPHLLAGRDVVGQAQTGTGKTAAFSLP
ILERIDLDVTAVQALVLTPTRELAMQVTEAIRDLSGISSEGPVKVGRSLQVLTVYGGQSI
DRQMQRLKRGVHVVVGTPGRILDMLSRGSLKLDKVKWLVLDEADEMLSMGFIQDVEKILD
AAPKERQTAFFSATMEASIRKLVARHLRNPVNVTVEQPKATPKRISQGVYMIPRGWSKAR
ALQPILEMEDPESALIFVRTRQSAAELTSQLQAAGHSVDEYHGNLNQAQRERLLHRFRQC
QVRWVVATDIAARGLDVDHLTHVINYDLPDSVESYVHRIGRTGRAGREGTAITLIQPVDR
RKLRLIERHVRSSLTVRNIPTRAQIEARQLEKMQGKVREALAGERMASFLPLVSQLSEEY
DSHAIAAAALQMAFDQSRPAWMGADYAQQEDPPIGGENSVKPILIKKRAKTGAPSNSVPA
PTFSGAPSAPVPQNS
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaatttattgtttgaaggcttaggtctttcggaagaactcgttctccatctggaaaca
ctaggctttacagaacctactcccatccaagtacaagcaattccgcacttgctagcaggt
cgcgacgttgtgggtcaagcccaaacagggacaggcaaaacggcagcattctcgttgccc
atcttggagcggattgatttagatgtaactgcggtgcaagcactggtgctgacgccgact
cgcgaattggcgatgcaagtaactgaagccatccgtgatttgagcggcatcagcagcgag
ggcccggtaaaagtgggtcgctctctgcaagttctgacagtgtacggcggtcaatcgatc
gatcgtcaaatgcagcgtttgaagcgcggcgtgcacgtcgtcgtcggtacacccggacgc
atattggatatgctcagccgtggcagcctgaaactagacaaggtaaagtggctggttttg
gatgaagctgacgaaatgctgagcatgggctttatccaagatgtggaaaaaatcttggat
gctgcaccaaaagaacgtcaaacggcatttttctcggcgacgatggaagcttccattcgg
aaattggtggcgcggcatttgcgtaacccagtcaacgtcaccgtagaacagccaaaagca
acgccaaagcgcatcagccaaggcgtgtacatgattccccgcggctggtcgaaggcaaga
gccctacagccaattttagaaatggaagacccggaatctgcactgatttttgtgcggact
cggcagtcggcggcagaactcaccagccaactgcaagcagccggtcacagcgttgatgag
tatcacggtaatttgaatcaggcacagcgggaacgcttgctgcatcggttccgccaatgt
caggtgcgctgggtagtggcgactgatattgcggcgcggggtttggacgtggatcacttg
actcacgtgattaactacgatttgcccgacagtgtggaaagctacgttcaccggatcgga
cgcacgggccgggctggtcgcgaaggaacggcaattacgctgattcaaccggtcgatcgc
cgcaaactgcgtttgattgaacgccacgttcgatcgagcttgacggtgcgaaacattccg
acacgggcgcaaattgaagctcgtcagttggaaaagatgcagggtaaagttcgcgaagct
ttggctggcgaacggatggcatctttcttgcctctggtatctcagttatccgaggagtac
gactcccacgcgatcgccgctgctgctttgcaaatggctttcgatcaaagccgtcctgct
tggatgggcgcggattacgctcaacaagaagatcccccgattggtggagaaaacagcgtc
aagccaatcttgatcaaaaagcgggctaagactggtgcaccgagtaattctgtaccagcg
ccgactttttctggagcaccgagtgctcctgttccccagaacagctaa
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