Microcoleus vaginatus: D0A34_10725
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Entry
D0A34_10725 CDS
T08026
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mvag
Microcoleus vaginatus
Brite
KEGG Orthology (KO) [BR:
mvag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mvag03016
]
D0A34_10725
Enzymes [BR:
mvag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
D0A34_10725
Transfer RNA biogenesis [BR:
mvag03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
D0A34_10725
Prokaryotic type
tRNA splicing ligases
D0A34_10725
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
UNU19281
LinkDB
All DBs
Position
complement(2634094..2635275)
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AA seq
393 aa
AA seq
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MPYEKLDISTPKPVLSWANHALGEKETKMTANVASLPFVFKHVALMPDVHLGKGALVGSV
IATKEAIIPAAVGVDIGCGMAAIKMPFTANKLEGKLKQIRLDIEAAIPVGFAENKEVEKT
VTNWQGWGEFKKLHQGVQHQNNKALKQMGSLGGGNHFIEVCVDTENFVWLMLHSGSRGIG
NLLAQQHIETAKDLAKLAEINLADKDLAYFVAGTREFAAYWHDLQWAQDYARFNRDVMMN
RFKRVVEKHVAGGKSVKPLLEVNCHHNYAEKEVHFGEDVYVTRKGAVRADVEDYGIIPGS
MGAKSFIVKGKGNAESYCSCSHGAGRLMSRNQAKNVFTLDDFVRQTEGVECRKDKEFLDE
IPGAYKPIDEVMSQQSDLVEVVATLKQVVCVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccctacgaaaaattagacatatcaaccccaaaacccgtgctatcttgggcaaatcac
gccctgggcgaaaaagaaactaagatgaccgccaacgtagcatctttgccctttgtattc
aaacacgtcgcactaatgcccgatgtacatttaggaaagggtgctttagtcggttcagta
attgccacaaaagaagcgattattcccgctgctgtgggcgtggatattggttgtgggatg
gctgctattaaaatgcctttcaccgctaacaaattagaaggcaaactcaaacaaattcgc
ctcgatatcgaagccgcaattcccgtgggatttgcggaaaacaaggaagtagaaaaaact
gtcaccaactggcagggatggggcgagtttaagaaacttcatcaaggcgtgcagcaccaa
aacaataaagccttaaaacaaatgggttccctcggcggcggcaatcattttattgaggtt
tgcgttgatactgaaaactttgtttggctgatgctgcattcgggttctcgcggcattgga
aacttgctcgcacagcagcacatcgagacggctaaagatttagctaaactcgcagaaatt
aacctggctgacaaagatttggcttattttgtagcgggtacgcgggagtttgctgcttac
tggcacgatttgcagtgggcgcaagattatgctcgttttaatcgcgatgtgatgatgaat
cggtttaagcgagttgtggaaaagcacgtcgcgggcggcaaatctgttaagccgttatta
gaggtgaattgccaccacaattacgcggaaaaagaggtgcattttggcgaagatgtgtat
gtgactcgcaagggtgctgtgcgcgcagatgtagaggattacgggattattccgggttcg
atgggggcgaaatctttcattgttaaggggaagggaaatgctgagagttactgtagttgc
agtcacggcgcggggcggttgatgtctcgcaatcaagcgaagaatgtatttactctcgat
gattttgtgcggcagactgagggggttgagtgccggaaagataaggaatttttagatgaa
attccgggggcttataagccgattgatgaggtgatgagtcagcagtcggatttggtggaa
gttgtggcgactttgaagcaggtggtttgtgtcaaggggtga
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