Massilia varians: MasN3_01260
Help
Entry
MasN3_01260 CDS
T08769
Name
(GenBank) hypothetical protein
Organism
mvar
Massilia varians
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
T6SS_Tle1-like_cat
DUF6531
RHS
OCRE
Motif
Other DBs
NCBI-ProteinID:
BDT56632
LinkDB
All DBs
Position
complement(147634..152598)
Genome browser
AA seq
1654 aa
AA seq
DB search
MPPLPGVLGLELVRHYNSAYSRPTHTNGIVGRGWKLSYETELHVVGRTIQIVQADGSRVM
FARDPNDPSLCSTAEPSQGTVRITRTARGDEYRWLWADGRILSFNAAGKLLQIAVPTGEF
LSLQYDSRGLLLGVTDPQGRSLRLHYLSAELARAGDRFRGVQFIDTPVGRIAYEYGSVMP
KAALGSSKDVLANLVSVKGPDGQWHQRYYYEDPRHPTLLTGMSVEEPGTTGKPVVRRIAT
YGYDDQGKGNLTVRGLPARLKTGPDGKPLQPASLVEGTGVEQVTLDTRTAGQTVVSNSLG
KKTVYRHIILAGQYRLLEVRGAGCASCGDSDVRYRYDDIGRLIETIRLSPSGTPLEGIST
EYDHGGRISRVSRTDYRHGKPHQSSWIERYEYIGDARRPHLIARPSVVPGLETQTRYQYN
AHGQPLAITESGWTPTSGEEKVPQVLSRTTRYGYTLVSGRSLLTTIDGPLPNGPGATPVT
ADITALEWDARGNAVTAMTLPGGMRSQVRYDAAGRIAGVVGPNGQASTYAYNARHQVVAI
DRGGIGLGFRYDGMGNMIETGEDAGNGYRPVLRFDHDNAGRQTSVASHIGIAAIRHYDTE
GKLLAESVMSASFRQGRRFQYDATGRLTALTDDASGTRRIDWNAMGLPGVVTDALGRQRH
FRYDERGQLSQVTEAANTTQAGLYDTTLRLGRDPLGRIARIATPGGLTTHQLIDDFGRIV
ATGNADRGMLMRRYDEADRLVKSADANGNWANYEYDVAGRIVRQTLTDPRAPKGQRESVT
TWTYKGSRLTRIDHPGQQEQYTHDAAGRITTRTVTLSSPGGKAVTSLTEYAYDPNGRLSG
MSLPDGSMLEYRRNGQGQVVSLERHRIRTSWLRWLQSPEVIVRDLERDIVGLRSAAYGNG
VRARYQRSAQGVLARVDYRAPPRVAPAAGMTLALSVLSGARPAAAARARAAGLHTGPNNG
FAAVPTLPGALGHPRDRDALLDHRYLWDAEGNLLLQEAADRTSSYAYDAQDRLVASATVL
KVGKTLPAMSVSRYLYDGAGNRVLSQQDIDSQDELTAGTRAARYAPGSQRWLGDTATTAP
VYDPTGQPVTAGTRTYRWDAAGQLREVRAGNKVLARYRYDHRGLRVAKESGGTLRHYLYE
DRKLRAELSADGSIARQYVYLADQVVAVIDCDDTTLVAQPRSAFAQAVADLGAAVAGWFS
RPDTTAYLHTNHLGAVEAATDREGKLLWRAAYHPYGKLSSLSAQRGFELNLRLPGQYLDT
ETGLHYNDRRYYDPELGRYLSPDPIGLHGGVNSYAYVDGNPLKYVDPSGLILFAFDGTGN
SANPGSGASLSNVRKIYQAYDEKLNGSKFYITGIGTTDINMSYEGNVANGDGFDQRVALG
FKFLDEFIDSDTKSDLIDIDVVAFSRGAAEARVWLNQLVGKMRNGQYTSVNSRKTRCLNL
RFEGLFDTVSHLGYLHGNDDKYDFGIPTAVRHTAHAVALNEYRGDPVSFHLRSILGSQQP
LRANRIEQAFVGAHSDVGGGYESGDLADVALMWMLNQARQQGIKFDEDLITKAGWKTVTL
PILHDSSNNHLNVPRLAPHYDNRKIIYTDGKEVQALENTRVGGYSIADTKSLIRYYNRWC
GQPGSPAVGLVDMAKYSEWTKKMSLSVFLCGTGS
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgccaccgctgcctggcgtcctcgggctggaactggtacgacattacaacagcgcatac
agcaggccgacgcatacgaatggcatcgttggccgtggctggaaactgagctacgagaca
gagctgcatgtagtaggccggaccattcagatcgtgcaggcagatggatcgcgcgtgatg
ttcgcgcgcgatccgaatgaccccagcctttgcagcacagcggaaccgtcccaaggtacg
gtgcgaatcacgcgcactgcgcgtggcgacgaataccgctggctctgggctgacggccgc
atcctgagtttcaacgccgctggcaagctgctccagattgccgttcccacaggtgaattc
ctgagcttacaatacgattcgagaggcttgttgcttggagtcaccgatccgcagggacgc
agtctgcgcctgcactatctctcggccgagttggcgcgcgcgggtgaccgcttccgtggc
gtgcaattcatcgacacacccgtaggccgaatcgcatatgaatacggaagtgtgatgccg
aaagctgccttgggttcgagcaaggacgtgctggccaatctggtaagcgttaaaggtcca
gatggccaatggcatcagcgttactattacgaagacccgcgtcatccgaccctactgact
ggcatgagtgtcgaggagccgggaacgacgggcaagccagtcgtccgtcgtatcgcgacc
tatggatacgacgatcagggtaaaggcaacctcacggttcggggactgccggcacgcctg
aagactggtcccgacggtaagccactgcaacccgcatccctggtcgagggtaccggtgtg
gaacaggtgaccctagatacccgtactgccggccagaccgtcgttagcaacagccttgga
aagaaaacggtttaccgccatatcatcttggcagggcaatacaggctgctggaagtgcgg
ggtgcgggatgcgccagctgcggcgacagcgacgttcggtaccgttatgacgacatcggc
aggttgatcgaaacaatccgcctatcacccagcggaaccccgctagagggaatatcgacg
gagtatgaccatggggggcgaatctcccgggttagccggaccgattaccgtcacggtaag
ccccatcaatctagttggatcgagcgttacgagtacattggcgatgcccggcgtccccat
ttgattgcgcgccccagcgttgttcctggcctggagacgcagacgcgctaccagtacaat
gcgcacggccagccgcttgctatcaccgagtccggatggaccccgacaagcggagaggag
aaagtgccgcaagtcctctcccgcaccacgcgctacggctacacgctggtaagcggccgc
agcctgcttaccacgatcgatggcccgcttccgaacgggccaggcgccacgcccgtaacg
gccgatatcacggcactcgaatgggatgcgcggggcaacgcagtgacggccatgacccta
cccggtggaatgcgcagccaggtgcgctacgacgcggctggccgcatcgctggagtcgtc
ggaccgaatggccaggcatccacctatgcgtacaacgcccgtcaccaagtcgttgcaatt
gatcgtggcggaatagggctgggctttcgctacgatggaatgggcaacatgatcgaaact
ggggaagacgctggaaatggctaccgacctgtcctgcgcttcgaccatgacaacgccggg
cgccagacatcggtggcctcgcacatcggcatcgcggcgattcgtcattacgataccgag
ggcaagctgctggcggagagcgtgatgtcggcgagttttcgtcaaggccggcgcttccag
tacgacgctaccggacgcctgactgcgctgaccgatgacgctagcgggacgcgccgcatc
gactggaatgcaatgggcttacccggcgttgtcaccgatgccctgggccgccaacggcat
ttccgctacgacgaaagaggccagctgtcgcaggtaaccgaagccgccaacacgacgcaa
gctggcctgtacgacacgacgctgcgcctgggacgtgatccactgggccggatcgcgcgc
atcgccacgcctggtggtttgacgacacaccagcttatcgacgatttcgggcgcatcgtc
gccaccggtaatgccgaccgcggcatgcttatgcggcgctacgacgaagccgaccggttg
gtgaagagcgccgatgcgaacggcaactgggccaactacgagtatgacgtggccgggcgt
atcgtccggcagaccctgactgatccgcgcgcgccaaaaggtcagcgggaaagcgtgacg
acctggacttacaagggctcccggttgaccaggatcgaccatcctggtcagcaggaacag
tacacccacgatgccgccgggcgtattactaccaggaccgtgacgctgtcgtcgcccggt
ggcaaggccgtcaccagcctgaccgaatatgcctatgacccgaatggtcgcttgtccggc
atgtccctgcccgacggcagcatgctcgagtaccggcgcaatggccagggccaggtcgtg
tcgctcgagcgtcaccgtatccgtacctcctggctgcgctggctgcaatctcccgaggtc
atcgtcagggacctggagcgcgacatcgtcggtttgcgcagcgccgcctacggcaacggg
gtgcgtgcgcgctaccagcgcagtgcgcaaggggtgctggccagggtcgactaccgcgcg
ccgccacgtgtggcgccggctgccggcatgacactggcgctttctgtcctgtcgggcgcc
aggccggccgccgcggcgcgtgcgcgcgcggcgggtctgcacaccggcccgaacaatgga
ttcgcggcggtgccgacactgccgggcgcgcttggacacccgcgtgatcgggatgccttg
ctggatcatcgctatctgtgggacgccgaaggtaacctgctcctgcaggaagccgccgac
cggaccagtagctatgcctacgatgcccaggatcgcctggtcgccagcgccacggtgctc
aaggtaggcaagacgctgccggctatgagtgtcagccgctacctgtatgatggcgctggc
aatcgcgtgctgtcgcagcaggacatcgacagccaggatgaactcacggccggcacgcgt
gcggcacgctacgcgcccggcagccagcgctggctcggcgataccgcgaccacggcaccc
gtgtacgacccgaccggccagcctgttactgccgggacgaggacctaccgctgggacgcc
gccggccagctacgcgaggtgcgtgccgggaacaaggtcctggcgcgttaccgctacgac
caccggggcctgcgggtggccaaggaaagcggcggcacgctgcgccactacctgtacgaa
gaccgcaagctgcgcgcggagctctccgccgacggctcgatcgcccgccaatacgtgtac
ctggccgatcaggtcgtggcggtgatcgactgcgatgacactaccctggtcgcgcagccg
cgctcggcgttcgcccaagccgtggccgacctgggggcggcagtcgccggctggttttca
aggccggacacaaccgcctatctgcataccaatcacctgggtgcggtggaggcggctact
gaccgtgaaggaaagctgctctggcgcgcggcatatcatccctacggcaagctttctagc
ctgagcgcgcagcgcggcttcgagcttaacctgcgtctgccagggcagtatctcgatact
gaaaccggactgcactacaacgatcgtcgctattacgaccccgagctggggcgttatctc
tcgcccgatccgatcgggctgcacggcggcgtcaacagttatgcctacgtggacggcaac
ccgctgaagtacgtggacccgagcgggctgattctgtttgccttcgacggcaccggcaat
agcgctaatcctgggtcgggagcgtctttgtcgaatgtgcggaagatataccaggcctac
gatgagaagctgaatggaagtaagttctacattactggcatcggtaccacggacatcaac
atgagctatgaaggcaatgtggccaacggcgacggcttcgaccagcgcgtcgcgctaggc
ttcaagttcctcgacgagtttatcgacagcgataccaaatcggacctgatcgacattgat
gtagtcgctttcagccggggcgcggccgaggcacgggtctggctaaaccagctggtggga
aaaatgcgcaatggccagtacacatccgtcaacagtcgaaaaacccgctgtctcaacctg
cgcttcgagggtctgttcgacaccgtctcgcatctaggctacctgcacggcaacgacgac
aagtatgacttcgggattcctacagcggtgcgccatacagcgcatgccgttgccctgaat
gaataccgcggcgacccggtgagctttcacctgcgctcgatcctgggttcgcagcagcca
ttgcgagccaaccggatcgaacaagccttcgttggcgcccattcggacgttggcggtggc
tatgagtcgggcgacctggcggatgtggcgctgatgtggatgctgaaccaagcccggcaa
caggggatcaagttcgatgaagacctgattacgaaggcgggatggaagaccgtcaccctc
cccatccttcacgacagcagcaacaaccatctcaacgtgccgaggctggcaccgcattac
gacaatcgaaagattatttacacggatggtaaagaagtgcaagccttggagaacacacga
gtcggcggatacagcattgcagatacaaagtccctcatccgttactacaaccgctggtgc
ggtcaacccggctcgcccgcagttgggctggtggacatggcgaaatacagtgagtggacc
aagaaaatgagcctgtcagtatttctgtgtggaacggggtcatga
DBGET
integrated database retrieval system
