Massilia varians: MasN3_11200
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Entry
MasN3_11200 CDS
T08769
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
mvar
Massilia varians
Pathway
mvar03030
DNA replication
mvar03410
Base excision repair
mvar03420
Nucleotide excision repair
mvar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mvar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MasN3_11200 (polA)
03410 Base excision repair
MasN3_11200 (polA)
03420 Nucleotide excision repair
MasN3_11200 (polA)
03440 Homologous recombination
MasN3_11200 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mvar03032
]
MasN3_11200 (polA)
03400 DNA repair and recombination proteins [BR:
mvar03400
]
MasN3_11200 (polA)
Enzymes [BR:
mvar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MasN3_11200 (polA)
DNA replication proteins [BR:
mvar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MasN3_11200 (polA)
DNA repair and recombination proteins [BR:
mvar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
MasN3_11200 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MasN3_11200 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
BDT57626
UniProt:
A0ABM8C360
LinkDB
All DBs
Position
1237306..1240080
Genome browser
AA seq
924 aa
AA seq
DB search
MENTLLLVDGSSYLYRAYHALPDLRSPDGFPTGAMHGMVNMLRRLRADYPAAYIACVFDA
KGKTFRDDLYPEYKATRASMPEDLGKQIEPIHEVVRHLGWPILMVDGVEADDVIGTLAVQ
AAARGMKTIISTGDKDLAQLVNDKVMLVNTMSNEKLDEAGVLAKFGVAPNRIIDYLTLIG
DTVDNVPGVSKCGPKTAVKWLTLHGSLDGVIENAHAIGGAVGENLRAALEWLPKGRELIT
VKTDCDLVSHVVSFEETLVGRPEDAEALRDFFQRYGFKTMLRDLGGAPRADGAVAPARGL
GAGGTPLNSPEGASGSLPGMAIIKGEYETILTDEQLDKWLALIDAAALTSIDTETTSLDP
LSAEMVGISLSVEAGKGAYIPVAHRYAGAPDQLGREHVLERMRSWLEDPSKPKLGQNLKY
DMHIFENHGIKLKGIVHDTLLQSYVFESHKPHDMDTMAMRHLGYTTIPFVDVCGKGANMI
CFDQVELGRATEYAGEDSDITLRLHQTMLPHVESDAGLTRIYREIEMPTMEVLQKIERNG
VLIDSELLGVQSGELGARMLELEQQAYELAGGPFNLGSPKQIGEIFFVKLGLPVIKKTAT
GAPSTDEEVLQKLAEDYPLPKILLEHRGMSKLKSTYTDKLPKMVNPKTGRVHTNYAQAVA
ITGRLSSNEPNLQNIPVRNAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHISGDPAML
KAFAEGEDIHRATAAEIFGIPPEEVQSEQRRYAKVINFGLIYGMSAFGLAQNLGIERGAA
SNYIERYFARFAGVKQYMDETRLQAKARGYVETVFGRRLWLPEINSPNGPRRAGAERAAI
NAPMQGTAADLIKLAMIAVQGWLEADKLGTRMIMQVHDELVLEVPEAELELVRVKLPQLM
AGVATLNVPLVAETGVGPNWERAH
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataccctgctgctcgttgacggctccagctacctttaccgcgcctaccacgcg
ctgcccgacctgcgcagcccggacggtttcccgaccggcgccatgcacgggatggtcaac
atgctgcgccgcctgcgcgccgactacccggcggcctacatcgcctgcgtgttcgacgcc
aagggcaagaccttccgcgacgacctctacccggaatacaaggccacccgcgcctcgatg
ccggaagacctgggcaagcagatcgaaccgatccacgaggtggtgcgccacctcggctgg
ccgatcctgatggtcgacggcgtcgaagccgacgacgtgatcggcaccctggccgtgcag
gccgccgcgcgcggcatgaagaccatcatctcgaccggcgacaaggacctggcccagctg
gtcaacgacaaggtcatgctcgtcaataccatgagcaacgagaagctcgacgaagccggc
gtgctggcgaaattcggcgtggcgccgaaccgcatcatcgactacctgaccctgatcggc
gacaccgtcgacaacgtgccgggcgtgagcaagtgcggtccgaagacggcggtgaagtgg
ctgaccctgcacggctcgctcgacggcgtgatcgagaacgcccatgcgatcggcggcgcg
gtcggcgagaacctgcgcgcggccctcgaatggctgccgaagggccgcgaactgatcacc
gtgaagaccgactgcgacctggtgagccacgtggtctccttcgaggaaaccctggtcggc
cgtccggaagacgccgaggccctgcgcgacttcttccagcgctacggcttcaagaccatg
ctgcgcgacctgggcggcgctccccgcgccgacggcgcggtggcgccggcgcgcggcctt
ggcgcgggcggcacgccgctcaattccccggaaggcgcctccggcagcctgcccggcatg
gccatcatcaagggcgagtacgaaaccatcctcaccgacgaacagctcgacaaatggctg
gcgctgatcgacgccgccgcgctgacctcgatcgacaccgagaccacctcgctcgaccca
ttgagcgccgagatggtcggcatctcgctgtcggtggaggcgggcaagggcgcctacatc
ccggtggcgcaccgctatgccggcgcacccgaccagctggggcgcgagcacgtgctggag
cgcatgcgttcctggctggaggacccaagcaagcccaagctgggccagaacctgaagtac
gacatgcacatcttcgagaaccacggcatcaagctcaagggcatcgtgcacgacaccctg
ctgcagtcctatgtgttcgagtcgcacaagccgcacgacatggacaccatggcgatgcgc
cacctcggctacaccacgattccgttcgtcgacgtgtgcggcaagggcgccaacatgatc
tgcttcgaccaggtcgagctgggccgcgccaccgagtacgccggcgaggattccgacatc
accctgcgcctgcaccagaccatgctgccgcacgtcgagagcgacgcgggactgacccgc
atctaccgcgagatcgagatgccgaccatggaagtgctgcagaagatcgagcgcaacggc
gtgctgatcgactcggagctgctgggcgtgcagtcgggcgagctgggcgcgcgcatgctg
gagctggagcagcaggcctatgaactggccggcggccccttcaacctcggttcgcccaag
cagatcggcgagatcttcttcgtcaagctgggcctgccggtgatcaagaagaccgccacc
ggcgcgccgtccaccgacgaagaggtgctgcagaagctggccgaggattatccgctgccg
aagatcctgctggaacatcgcggcatgtccaagctgaagtcgacctataccgacaagctg
cccaagatggtcaaccccaagaccggccgcgtgcacaccaactacgcgcaggcggtggcg
atcaccgggcgcctgtcctcgaacgagccgaacctgcagaacatcccggtgcgtaacgcg
gaagggcgccgcatccgcgaagccttcatcgcgccgcccggcagcgtgatcgtctcggcc
gactattcgcagatcgagctgcgcatcatggcgcacatttcgggcgacccggccatgctc
aaggcttttgccgaaggcgaggacatccaccgcgccaccgccgccgagatcttcggcatc
ccgcccgaggaagtgcagagcgagcagcgccgctacgccaaggtgatcaacttcggcctg
atctacggcatgagcgccttcggcctggcccagaacctgggcatcgagcgcggcgcggcc
tccaattacatcgagcgctacttcgcgcgcttcgccggcgtgaagcagtacatggacgag
accagattgcaggccaaggcgcgcggctacgtggaaaccgtgttcggacgccgcctgtgg
ctccccgagatcaactcgccgaacggcccgcgccgcgccggcgccgaacgcgcggcgatc
aacgcgccgatgcagggcacggcggcggacctgatcaagctggccatgatcgcggtgcag
ggctggctggaagccgacaagctcggcacccgcatgatcatgcaggtgcacgacgagctg
gtgctcgaggtgccggaagccgagctggaactggtgcgcgtgaagctgccgcaactgatg
gcgggcgtggccacgctgaacgtgccgctggtggccgagaccggcgtggggccgaactgg
gagcgcgcccattga
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