Massilia varians: MasN3_24230
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Entry
MasN3_24230 CDS
T08769
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mvar
Massilia varians
Pathway
mvar03410
Base excision repair
mvar03430
Mismatch repair
mvar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mvar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MasN3_24230 (recJ)
03430 Mismatch repair
MasN3_24230 (recJ)
03440 Homologous recombination
MasN3_24230 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvar03400
]
MasN3_24230 (recJ)
DNA repair and recombination proteins [BR:
mvar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MasN3_24230 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MasN3_24230 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MasN3_24230 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BDT58929
LinkDB
All DBs
Position
complement(2715183..2716886)
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AA seq
567 aa
AA seq
DB search
MSIATRITTRPCPFRTSEMLRQGGVHPVLARIYAARGLLDVRELSSELAALVPPGGLKHI
EAAASFLADSIAAGKRMTIVADYDCDGATACAVALRGLRMMGAQVDYIVPNRFEYGYGLT
PEIVELTAREKSPDIIITVDNGIASIDGVLEANRRGIEVVVTDHHLPGDALPPARVIVNP
NQPECGFPSKHLAGVGVVFYVLLALRAELRRRGVFDAQTQPKLDSLLDLVALGTVADVVR
LDANNRILVAQGIKRMRAGRMHAGVAALFRVAGREARCASPFDLGFALGPRLNAAGRLED
MSLGIECLVTDDVGRAWAIAQQLNEINLKRREIEAEMQDTALLHLDSFEPSGSSTISVFD
EGWHQGVIGIVASRLKEKFYRPTITFAPAGDGWIKGSGRSIPGFHLRDALDLVSKRVPGL
IDKFGGHAMAAGLSIRADHFDSFQQAFEAVGKAWLTEAQLERIIETDGPLEDEFYCTGFI
EEMDGQVWGQGFAPPVFCDEFRVVSQRILKERHLKLLLEKNGRRYDAIWFGHADSLPERA
RVAFRLDANEYNGVTKVQLLVEHAEPA
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
ttgagcattgcaacccgtatcaccacccgcccctgtcctttccgcacctccgagatgctg
cgccagggcggggtccatccggtcctcgcgcgcatctacgcggcgcgtggcctgctcgac
gtgcgcgagctctccagcgagctggcggccctggtgccgcccggcggcctgaaacacatc
gaagcggccgccagcttcctggctgactccatcgcagccggcaagcgcatgaccatcgtc
gccgactacgactgcgacggcgccaccgcctgcgcggtcgccctgcgcggcctgcgcatg
atgggcgcgcaggtcgactacatcgtcccgaaccgcttcgagtacggctacggcctgacg
cccgagatcgtcgagctgacggcccgcgagaagtcgcccgacatcatcatcacggtcgac
aacggcatcgccagcatcgatggcgttctggaagccaaccggcgcggcatcgaagtcgtg
gtcaccgaccaccacctgccgggcgacgccttgccgccagcgcgcgtgatcgtcaacccg
aaccagcccgagtgcggcttccccagcaagcacctggccggcgtcggcgtggtgttctac
gtgctgctggcgctgcgggccgaactgcgccggcgcggcgtgttcgacgcccagacccag
cccaagctcgacagcctgctcgacctggtggcgctgggcacggtggccgacgtggtcagg
ctcgacgccaacaaccgcatcctggtcgcgcagggcatcaagcgcatgcgcgcgggccgc
atgcatgccggcgtggcggccctgttccgggtggcgggccgcgaggcgcgctgcgcctcg
cccttcgatctcggcttcgcgctgggtccgcgcctgaacgccgccggccggctggaagac
atgtcgctcgggatcgagtgcctggtgacggacgacgtcggtcgcgcctgggcgattgcc
cagcagctcaacgagatcaatctgaagcggcgcgagatcgaggccgagatgcaggacacc
gccctgctccacctggacagcttcgagccctcgggatccagcacgatcagcgtgttcgac
gaaggctggcaccagggcgtgatcggcatcgtcgcctcgcgcctgaaggaaaagttctac
cggccgaccatcaccttcgccccggccggtgacggctggatcaagggctcgggccgctcg
atcccgggctttcacctgcgagacgcgctcgacctggtgtccaagcgcgtgcccggcctc
atcgacaagttcggcggccacgcaatggcggccggcctgtccatccgcgccgaccacttc
gacagcttccagcaggccttcgaggcggtcggcaaggcctggctgaccgaggcgcaactg
gaacgcatcatcgaaaccgacggcccgctcgaggacgagttctactgcaccggcttcatc
gaggagatggacggccaggtctggggccagggcttcgcgccgccggtattctgcgacgag
ttccgggtggtaagccagcgcatcctgaaggagcgccacctcaagctgctgctggaaaag
aacggccgccgctacgacgcgatctggttcgggcatgccgacagcctgccggagcgggcc
cgggtcgcgttccggctggatgcgaacgagtacaacggcgtgaccaaggtgcagctgctg
gtcgagcacgccgagcctgcgtga
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