Massilia varians: MasN3_32500
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Entry
MasN3_32500 CDS
T08769
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mvar
Massilia varians
Pathway
mvar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mvar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MasN3_32500 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvar03400
]
MasN3_32500 (recB)
Enzymes [BR:
mvar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
MasN3_32500 (recB)
DNA repair and recombination proteins [BR:
mvar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MasN3_32500 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
BDT59756
LinkDB
All DBs
Position
complement(3655488..3659147)
Genome browser
AA seq
1219 aa
AA seq
DB search
MSQQLEPLVFPLHGTRLIEASAGTGKTWTIAALYLRLVLGHGGETAFARPLLPSEILVMT
FTRAATRELANRVRERLVEAAAYFRGQHDIDDPYLAELADAYPTDAERSVAAHRLVLAAE
TMDEAAIFTIDAWCQRMLREHAFDSGSLFDEELVSDERALFEDAAHDYWRQHIYPLGAEA
LASVRECWRDVEALKGGVRELVTRTHLLGECAPEPLGSLVSRVQAALRAELAGLKEGWSA
RADEMESWIAGQRERNPKCFNGNKMRADSLVKWFEALRAWAIDPARLLPDLNETAWKRLC
PDGINDAFSKDFVAEVPACFGFTAPLRDALARLQPLSHALLRHAASHIAARMRELKARNR
QFGFADMLERLKDALEGPNGQALRQRIVLQFPVAMVDEFQDTSPDQYRIFDLLYRVADND
PERGLFLIGDPKQSIYGFRGADIHSYLAARRATSGRHYQLGVNYRSTSELVEAVNQLFRH
AEGADGQGGYPAGAFRFRRGEDNPLPFESVKAKGHRERLVGAGGAQHAMSVCCAGPMNQE
EYREYFAHHCAEHIVGLLGDERVGFSDGERFRRLMPADIAILVRDRREASAVRRALVERK
VASVYLSDKDSVVESEEAADVLRWLYAVANPLDGILARAAFATRTAGLPLAELARLSSDE
VAWEERVEQLKNLHGAWQRQGVLAMLRRFVHELGLPARLLRQPGGERRLTNLLHLAELLQ
EASGQLEGEQALIRWLAEQVEGLGEGGDERVLRLESDAELVKVVTVHKSKGLEYPLVYLP
FAVTARRTDRRNRAFFEFVGSDGTRRLDLAMDDASLEAVDRARLEEDLRLLYVALTRARH
YLWLGAAPISGRSKNENRLHESALGYLLGGGEKIAAELLRERLERLRGGVEGIVLHDLTE
AQGRTLLAREDVRPELLGAPRYEASFERDWSIGSFTSLVRHAVAVVAPPPAPMRAQEETL
LEEAPQVLTPPRIEDAPWHRFPRGSVPGNFMHEQLEWMAAEGFHRADEPDFMLRLGQRIE
RAGWGHRLDDALAWLHAVVTTPLPPLGAALGGLRGETAPVPELEFWFPSERLDVVQLDRL
CRARIMKGLDRPVLPERVLHGMLKGFADLVFEHEGRYWVLDYKTNALGPGDAAYTQAAME
LGMAEHRYDIQATIYMLALHRLLKSRLGSAYDPCRQLGGAVFLFLRGIANADTCGCCVLG
PDMELLAGLEALLDKDHHA
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcagctcgaacccctggtcttcccgctgcacggcacgcgcctgatcgaggcc
tcggccggcaccggcaagacctggaccatcgccgcgctctacctgcgcctggtgctcggc
cacggcggcgagaccgcctttgcccgcccgctgctgcccagcgaaatcctggtgatgacc
ttcacccgcgcggccacgcgcgagctggccaaccgcgtgcgcgagcgcctggtcgaggcg
gccgcctatttccgtggccagcacgacatcgacgacccctacctggccgagctggcggat
gcctatcccacggacgcagagcgcagcgtcgccgcccaccgcctggtgctggcggccgag
acgatggacgaggcggcgatcttcaccatcgacgcctggtgccagcgcatgctgcgcgag
cacgccttcgactccggcagcctgttcgacgaagagctggtcagcgacgagcgcgccctg
ttcgaggacgccgcccacgactactggcgccagcacatctacccgctgggcgcggaggcg
ctggcctcggtgcgcgaatgctggcgcgatgtcgaggccctgaaggggggcgtgcgcgag
ctggtgacgcgcacccacctgctgggcgaatgcgcgcccgagccgctcggctccctggtg
tcgcgcgtgcaggcggcgctgcgcgccgaactggccggcctcaaggagggctggagcgcc
cgcgccgacgagatggaaagctggatcgccggccagcgcgagcgcaacccgaagtgcttc
aacggcaacaagatgcgcgccgactcgctggtgaagtggttcgaggcgctgcgcgcctgg
gcgatcgacccggcgcggttgctgcccgacctgaacgagacggcatggaagcgcctgtgc
ccagacggtatcaatgacgctttcagcaaggacttcgtggccgaggtgccagcctgcttc
ggcttcaccgcgccactgcgggacgcattggcgcgcctgcagccgctgtcgcacgcgctg
ctgcgccacgccgccagccacatcgccgcccgcatgcgcgagctgaaggcgcgcaaccgc
cagttcggcttcgccgacatgctcgaacgcctcaaggatgcgctggaaggcccgaacggc
caggccctgcgccagcgcatcgtgctgcagttcccggtggcgatggttgacgaattccag
gacacctcgcccgaccagtaccgcatcttcgacctgctgtaccgggtggcggacaacgac
ccggagcggggcctgttcctgatcggcgacccgaagcagtcgatctacggctttcgcggc
gccgacatccacagctacctggcggcgcgccgcgccaccagcggccgccattaccagctg
ggcgtcaactaccgctccaccagcgagctggtggaggcggtcaaccagctgttccgccac
gccgagggcgcggacgggcagggcggctatcccgcgggcgccttccgtttccgccgcggc
gaggacaatccgctgcccttcgagtccgtcaaggccaagggccaccgtgagcgcctggtg
ggagccggcggcgcccagcatgcgatgtcggtgtgctgcgccggcccgatgaaccaagaa
gagtaccgcgagtactttgcccaccactgcgccgagcacatcgtcggcctgctgggcgac
gagcgcgtcggcttctcggacggcgagcgtttccgccgcctgatgccggccgatatcgcg
atcctggtgcgcgaccggcgcgaggcgagcgcggtgcgccgcgccctggtcgagcgcaag
gtcgccagcgtctacctgtccgacaaggattcggtggtcgagagcgaggaagcggccgac
gtgctgcgctggctgtacgcggtggccaacccgctcgacggcatcctggcgcgggcggcc
ttcgccacccgcaccgccggcctgccgctggccgaactggcccggctctcgagcgacgaa
gtggcctgggaagagcgtgtcgagcagctgaagaacctgcacggcgcctggcagcgccag
ggcgtgctggccatgctgcgccgcttcgtgcacgaacttggcctgccggcgcgcctgctg
cgccagccgggcggcgagcggcgcctgaccaacctgctgcacctggccgagctgctgcag
gaagcgagcggccagctggaaggggagcaggccctgatccgctggctggccgagcaggtc
gagggtttgggcgaaggcggcgacgagcgcgtgctgcgcctggaaagcgatgccgagctg
gtcaaggtggtgacggtccacaagtcgaagggcctggaatacccgctggtctacctgccg
ttcgcggtgaccgcgcgccggacagaccgtcgcaaccgcgccttcttcgagttcgtcggc
agcgacggcacgcgccggctcgacctggccatggacgacgcgtccctggaggcggtggac
cgcgcgcgcctggaagaggacctgcgcctgctgtacgtggcgctcacccgcgcgcgccac
tacctatggctgggcgcggccccgatcagcggccgcagcaagaacgagaaccgcctgcac
gagtcggcgctcggctacctgctgggcggcggcgagaagatcgcggccgaactgctgcgc
gagcggctggagcgcctgcgcggcggcgtcgaaggcatcgtgctgcacgacctgaccgag
gcgcagggccgcaccctgctggcgcgcgaagacgtgcgtccggagctcctgggagccccg
cgctacgaagccagtttcgagcgcgactggtcgatcggctccttcacctcgctggtgcgc
catgccgtggcggtggtcgccccgccgccggcgccgatgcgcgcccaggaagaaaccctg
ctggaagaggcgccgcaggtgctgacgccgccgcgcatcgaggacgcgccctggcaccgc
ttcccgcgtggctcggtgcccggcaacttcatgcacgaacagctcgaatggatggcggcg
gaaggttttcatcgcgccgacgagccggacttcatgctcaggcttggccagcgcatcgaa
cgcgccggctggggccaccgcctggacgacgccctggcctggctgcacgcggtggtcacg
accccgctgccgccgctgggcgcggccctgggcggcctgcggggtgaaactgcgccagtg
ccggagctggaattctggttccccagcgagcgcctcgacgtggtgcagctggaccgcctg
tgccgcgcgcgcatcatgaagggcctggaccgtccggtcttgccggagcgggtgctgcac
ggcatgctcaagggcttcgccgacctggtgttcgagcacgagggccgctactgggtgctc
gactacaagaccaatgcgctgggcccgggcgacgccgcctacacccaggccgcgatggaa
ctgggcatggccgagcaccgctacgacatccaggccaccatctacatgctggcgctgcat
cgcctcctgaagagccgcttgggaagcgcctacgatccatgccgtcagctgggcggagcc
gtgttcctgttcctgcgcgggatcgccaatgccgacacgtgcggctgctgcgtgctgggc
ccggacatggaactcctggccggactggaagcattgctggacaaggaccatcatgcttaa
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