Massilia varians: MasN3_34190
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Entry
MasN3_34190 CDS
T08769
Symbol
sbcD
Name
(GenBank) nuclease SbcCD subunit D
KO
K03547
DNA repair protein SbcD/Mre11
Organism
mvar
Massilia varians
Brite
KEGG Orthology (KO) [BR:
mvar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvar03400
]
MasN3_34190 (sbcD)
DNA repair and recombination proteins [BR:
mvar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MasN3_34190 (sbcD)
Archaeal homologous recombinant proteins
MasN3_34190 (sbcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
BDT59925
LinkDB
All DBs
Position
3852126..3853379
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AA seq
417 aa
AA seq
DB search
MRLLHTSDWHLGQTLHTFDRSYEHACFLDWLVATLAAQQIDVLLIAGDIFDNANPSAAAH
RQLYRFLQQARREVPHLQVVVIAGNHDSPGRLEAPTPLLEAHGTIVVGNVARSPDGSVDL
ERLLVPLRRRDGTVGAWCLAVPFLRPGDVPRVAAEDESAALDPYLQGTALLYRQAFALAR
SRCTGNEAIVAMGHCHMVDGQSSQDSERRIVIGGTEALPASMFDPQVAYVALGHLHLAQR
VGGHEHRRYCGSPLPLSFSEVGYQHQVLLVELDGASTRSVTPLPVPRAVQLLRVPSQPAP
IDEVLAALEALALPDAPPQQQPFLEVRVLLEGPEPGLRARVEAALAGKPVRLAKIEPTRR
HASVDQAEEALSLDQLAQLQPDDIFRRLWAQRYGDEAPPEQLAAFAELTTALGGDAA
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgcggctgctccatacttccgactggcacctgggccagaccctgcacaccttcgatcgc
agctacgagcatgcgtgcttcctcgactggttggtggcgacgctcgcggcgcagcagatc
gacgtgctgctcattgccggcgacatctttgacaatgccaacccgtcggccgccgcccac
cgccagctgtaccgtttcctgcagcaggcaaggagggaggtgccgcatctgcaggtggtg
gtcatcgccggcaaccacgattcgcccgggcggctcgaagcgcccacgccgctgctggaa
gcgcacggcaccatcgtggtgggcaacgtcgcacgcagcccggacggcagcgtcgatctc
gagcgcctcctggtgccgctgcgccggcgcgacgggacggtcggtgcatggtgcctggcg
gttcccttcctgcgcccgggcgacgtgccgcgggtggcggccgaagacgaatcggcggcg
ctggacccctatctgcaaggcaccgccctgctctaccgccaggccttcgcgctggcccgg
tcgcgctgcaccgggaacgaggcgatcgtcgccatggggcactgccacatggtcgacggc
cagtcgtcccaggattccgagcgccgcatcgtgatcggcggcaccgaggccctgccggcg
tcgatgttcgatccgcaagtggcctacgtggccctgggccacctccatctggcgcaacgg
gtcggcggccatgagcaccgccgctattgcggcagcccgctgccgctgtccttctccgaa
gtcggctaccagcaccaggtgctgctcgtcgagctcgacggcgcgagcacccggtcggtg
acgccgctgccggtaccgcgcgcggtgcaattgctgcgcgtaccaagccagccggcgccg
atcgacgaggtgctggccgcgctggaagcgctcgcccttcccgacgcgccaccgcagcag
cagcccttcctcgaggtgcgcgtgctgctcgaaggtcccgagccgggcctgcgcgcgcgc
gtcgaagcggccctcgccggcaagccggtgcgcctggccaagatcgagccgacgcgccgc
cacgccagcgtcgaccaggccgaggaagccctgagcctcgaccagctggcccagctgcag
ccggacgacatcttccggcgcctgtgggcgcagcgctacggcgacgaggcgccgccggag
cagctggcggctttcgccgagctcaccacggccctgggtggagacgcggcatga
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