Massilia varians: MasN3_34200
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Entry
MasN3_34200 CDS
T08769
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
mvar
Massilia varians
Brite
KEGG Orthology (KO) [BR:
mvar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvar03400
]
MasN3_34200 (sbcC)
DNA repair and recombination proteins [BR:
mvar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MasN3_34200 (sbcC)
Archaeal homologous recombinant proteins
MasN3_34200 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
nSTAND3
AAA_21
Motif
Other DBs
NCBI-ProteinID:
BDT59926
UniProt:
A0ABN6TE15
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All DBs
Position
3853376..3857152
Genome browser
AA seq
1258 aa
AA seq
DB search
MRILRISGKNLASLAGEFLVDFEAEPLASSGLFAISGPTGAGKSTLLDALCLALYDATPR
LLKRAGSQLPDVGGDTVSALDPRTLLRRGAADAWAEVDFAGNDDIRYRARWSVRRAYGKP
SGALQPSKMTLHRLPELAPLGGTKTEVTLEIVQRIGLSFEQFTRAVLLAQNEFSAFLKTD
ENERGELLETLTGTTIYSDISRRAFERYRAEQERTRTLSARLANQAPMPPDERDKLEAER
VNAELALEAVDARRAALEGELRWHQEAAKLQQSEAQALAALDRAQAAQQEAAGRRQRLAT
LDAVQPARPLVTDVQRLQEEHKAALESTGKLESALAAALDARRQAALEVDAALSALDAAE
SALRASAPQLDSAKALDAAIAALAPAHGQAAAALEGARAEARQARAVHTAKAAEHDSAKG
QRERAGGWLALHARLEPMATQWPRWDKLLTQAAQSVALDAGAASALAAVTVQAQQAAAHE
QAAALALSGASERLEALDTARREAMAALDAVDPQALDSERQALDARRERLGAAEKAWTAL
VTTRQEHADTAAELDRVDTARAAAGRLLEEARGAAPALAAALRQAEKSLAAAELACASNV
EQLRATLHDETPCPVCGSHQHPYRDAGREDMLHAMLANLRAEVGDCRGRLRDNEAVQAAQ
AATLAATGDRLAGLQRERATLRKLLDELEAEWAAQPLAAEVPAADGQDDTVRKAWFADAR
DALRAAAAALDGRAAALRRAALARDAAQAAYDKAQQEHAGLRQARDSAREAGARLQAELR
AATVQRDAAAAQLAHLLAELDPVLSHACGDGWQDAWRRQGDAWHEGRAQEAAQWQQQTEL
QTRSSAALATLEAEVAGALDRIAQADRHGAGVAAEFKRIDAELKDKRDQRLALWHGRPVA
EVEQALQAAVGAARNHLSARQAVATETAQREASARSALAQLTGHIAQLDAAGARAAAALA
DWLEDYRKSAFVKGLDPVEDSAELGRLLAVGGTWLAQERSALGALDAQCASATAVLAERR
AQRVLHAEGAPESGLSLETVAAAVDALTSERRAAHDLATELRMRLGQDDARRVQAQTTLA
EIERQQLEEQRWGKLSELIGSSDGKKFRNYAQQFTLDVLLGYANAHLGQLARRYRLERVS
HNGAPSLALMVRDQDMGGEVRSVNSLSGGESFLVSLALALGLASLSSNRVRVESLFIDEG
FGSLDTDTLGVAMDALDALQSLGRKVGVISHVQEMTERIATKVLVRPAGGGSSAVVVE
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgaggatcctgcgcatcagcggcaagaacctggcttcgctggccggcgaattcctggtc
gacttcgaagccgaaccgctcgcctcgagcggcctgttcgccatcagcggccccaccggc
gcgggaaaaagcaccctgctcgacgccctgtgcctggcgctgtacgacgccaccccgcgc
ctgctcaagcgcgccggcagccagttgccggacgtcggcggcgacaccgtctcggcgctc
gacccgcgcaccctgctgcggcgcggcgccgccgacgcctgggccgaggtcgacttcgcc
ggcaacgacgacatccgctaccgcgcgcgctggagcgtgcgccgcgcctacggcaagccg
agcggcgccctgcagccctcgaagatgaccctgcaccggctgcccgaactggcgccgctg
ggcggcaccaagaccgaagtgacgctggaaatcgtgcagcgcatcggcctgtccttcgaa
cagttcacgcgcgccgtgctgctggcgcagaacgagttctcggccttcctcaagaccgac
gagaacgaacgcggcgagctgctggaaaccctcaccggcaccacgatctacagcgacatt
tcgcggcgcgctttcgagcgctaccgggccgagcaggagcggacccggaccctgtccgcc
aggctggccaaccaggcgccgatgccgcccgacgaacgcgacaagctcgaagccgagcgc
gtgaatgccgagctggcgctggaagcggtcgatgcgcgccgcgccgccctcgaaggcgaa
ttgcgctggcaccaggaagcggccaagctccagcagagcgaagcccaggccctggctgcc
ctcgacagggcccaggccgcgcagcaggaggcggccggacggcgccagcgcctggccacc
ctcgacgcggtacagccggcccgcccgctggtcacggacgtccagcgcctgcaggaagaa
cacaaggcggcgctcgagtcgaccgggaagctggaaagcgcgctggcggcggcgctggat
gcgcgccgccaggcggcgctcgaggtcgatgccgccctgtccgccctcgatgccgccgaa
agcgccttgcgtgcctcggcgccacagctcgacagcgccaaggcgctcgacgccgccatc
gccgcgctcgcacccgcgcacggccaggccgcggccgcactggaaggcgcccgcgccgag
gcgcgccaggcgcgcgccgtgcacaccgccaaggcggccgaacacgacagcgcgaaaggc
cagcgcgagcgcgccggcggctggctggcgctgcacgcgcggctggaaccgatggcgacc
cagtggccgcgctgggacaagctgctgacccaggccgcgcagtcggtcgcgctcgacgcc
ggcgccgccagcgcgctggcggcggtgaccgtccaggcgcagcaggccgccgcgcacgag
caggccgccgccctggcgctgagcggcgccagcgagcgcctcgaagccctcgacacggcg
cggcgcgaagcgatggccgccctcgacgcggtcgacccgcaggcgctcgacagcgaacgc
caggccctggacgcgcgccgcgagcgcctgggcgccgccgagaaggcctggacggcgctg
gtcacgacacgccaggagcatgccgacaccgctgccgaactcgaccgggtggacacggcc
cgcgccgccgccggccgcctgctggaggaagcacgcggcgcagcgccggccctcgcggcg
gcgctgcggcaggccgagaagtcgctggccgcggcggagctggcctgcgcgtcaaacgtg
gagcaattgcgcgcgaccttgcacgatgagacgccctgcccggtctgcggctcgcaccag
catccctaccgcgacgctggccgcgaggacatgctgcacgccatgctggcgaacctgcgc
gccgaggtcggcgactgccggggccgcctgcgcgacaacgaggccgtgcaggcggcgcag
gccgccaccctggccgccaccggcgaccggctcgccggactgcagcgcgaacgcgccacc
ctgcgcaagctgctcgacgaactcgaagcggagtgggccgcgcagccgctggcggccgag
gtcccggccgccgacggccaggacgatacggtgcgcaaggcctggttcgccgatgcccgc
gacgcgctacgcgccgccgcggcggcgctggacggccgcgccgctgccctgcgccgcgcg
gcactggcgcgcgacgccgcccaggccgcctacgacaaggcgcaacaggagcatgccggc
ctgcgccaggcccgcgatagcgcgcgcgaggccggcgcccgcctgcaggccgagttgcgc
gccgcgacggtccagcgcgatgccgccgccgcccagctggcgcatttgctggccgagctc
gacccggtcctgtcgcatgcctgcggcgacggctggcaggatgcctggcgccgccagggc
gacgcctggcatgaaggccgcgcccaagaggccgcgcaatggcaacagcagaccgagctg
cagacgcgcagcagcgccgcccttgccacgctcgaggccgaggtggccggcgcgctcgat
cgcatcgcccaggccgatcgccacggcgccggcgtcgccgccgagttcaagcgcatcgac
gccgagctgaaggacaagcgcgaccagcgcctcgccctgtggcacggccggccggtcgcc
gaagtggagcaggcactgcaggccgccgtcggtgccgcccgcaatcatctgtcggcccgc
caggcggtggccaccgagaccgcgcagcgcgaagccagcgcccgcagcgcactggcccag
ctgaccgggcacatcgcccagctcgacgccgccggcgccagggccgccgcggcgctggcc
gactggctggaagactaccgcaagtcggccttcgtcaagggcctcgatccggtcgaggac
tctgccgaactcggccgcctgctggcggtcggcggcacctggctggcgcaggaacgcagc
gcgctgggtgcgctcgacgcccagtgcgccagcgccaccgcggtgctggcggagcgccgc
gcccagcgcgtgctgcacgccgaaggcgcgcccgaaagcggcctgagtctcgagaccgtg
gccgccgccgtcgacgccctcaccagcgagcgccgtgcggcccacgacctcgccaccgaa
ctgcgcatgcggctcggccaggacgacgcccggcgcgtgcaggcccagacgacgctggcc
gagatcgagcgccagcagctcgaagaacagcgctggggcaagctgtccgagctgatcggc
tccagcgacggcaagaagttccgcaactacgcgcagcagttcacgctcgacgtgctgctc
ggctatgccaatgcccacctcgggcaactggcgcggcgctaccggctcgagcgcgtcagc
cacaacggcgcgccctcgctggccctcatggtgcgcgaccaggacatgggcggcgaagtc
cgctcggtcaattccctgtccggcggcgaatccttcctggtgtcgctggccctggcgctc
ggcctggcctcactgtcctcgaaccgggtgcgggtcgaatcgctgttcatcgacgagggc
ttcggcagcctcgacaccgacaccctgggggtggcgatggatgccctggacgcgctgcaa
tcgctgggccgcaaggtgggcgtgatctcgcacgtgcaggaaatgaccgagcgcatcgcc
accaaggtgctggtgcgtccggcgggcggcggctccagcgcggtcgtggtcgagtag
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