KEGG   Massilia varians: MasN3_36110
Entry
MasN3_36110       CDS       T08769                                 
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
mvar  Massilia varians
Pathway
mvar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mvar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MasN3_36110 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mvar03019]
    MasN3_36110 (pnp)
   03016 Transfer RNA biogenesis [BR:mvar03016]
    MasN3_36110 (pnp)
Enzymes [BR:mvar01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     MasN3_36110 (pnp)
Messenger RNA biogenesis [BR:mvar03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     MasN3_36110 (pnp)
Transfer RNA biogenesis [BR:mvar03016]
 Prokaryotic type
  tRNA degradation factors
   MasN3_36110 (pnp)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C PNPase S1 KH_1 S1_RRP5 KH_2 KH_KhpA-B OB_RRP5_4th KH-I_KHDC4-BBP DUF5813
Other DBs
NCBI-ProteinID: BDT60117
LinkDB
Position
complement(4054408..4056510)
AA seq 700 aa
MFNKVSKTFQYGQHTVTLETGEIARQASGAVVVSVEDTVILATVVAKKDAKPGQDFFPLT
VDYMEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV
NPEIDPDIPAMIGASAALCIAGIPFNGPIGAARVGYANGQYILNPTTTQLKTSQMDLVVA
GTETAVLMVESEAQQLSEEVMLGAVVFGHDQMRAVIDAIHDLVAEGGKPEVEWSPAPKNE
ELIARVNDLAGAAIRDAYQTREKSLRQQKLKSISADVMAGLATQGVEADAAEVGNILFDM
EAKVVRSQILNGEPRIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQALVVATLGTAR
DSQKIDALMGEYTDDFMMHYNMPPFATGETGRVGTPKRREVGHGRLAKRALVAALPSADE
FSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGGKFAVLTD
ILGDEDHLGDMDFKVAGTPAGITALQMDIKIQGITKEIMQVALAQAKEARQHILAEMQKA
VPSVKTELSDFAPRLITIRINPEKIRDVIGKGGAVIRALTEETGTQIDITDEGIVTIASV
DAAAGQEAKRRIEELTASVEVGKTYDGTVLKLLDFGAIVQVMPGKDGLLHISQIANERVN
AVADYLKEGQQVRVKVLETDERGRLKLSMKAADPVEGAAQ
NT seq 2103 nt   +upstreamnt  +downstreamnt
atgtttaataaagtttcgaaaaccttccagtacggtcaacacacggtcaccctggagacg
ggtgaaatcgcgcgccaggcaagcggcgccgtcgtcgtgtcggtcgaagacaccgtcatc
ctggccaccgtggtcgccaagaaggacgccaagccgggccaggacttcttcccgctgacc
gtcgactacatggagaaaacctacgcagccggtaagatcccgggcggcttcttcaagcgc
gaaggccgtccttcggaaaaggaaaccctgacctcgcgcctgatcgaccgtccgatccgc
ccgctgttcccggaaggctacctgaacgaagtccaggtcatcatccacgtcctgtcggtc
aaccccgagatcgatccggacatcccggccatgatcggcgcctcggctgcgctgtgcatc
gccggcatcccgttcaacggcccgatcggcgcagcgcgcgtcggctacgcgaacggccag
tacatcctgaacccgaccaccacccagctcaagacctcgcagatggacctggtcgttgca
ggcaccgaaaccgccgtgctgatggtggaatcggaagcgcagcagctgtcggaagaagtc
atgctgggcgcggtcgtcttcggccatgaccagatgcgcgccgtcatcgacgcgatccac
gacttggtcgccgaaggcggcaagccggaagtcgagtggagcccggcgccgaagaacgaa
gaactgatcgcccgcgtgaacgatctggcaggcgccgccatccgcgacgcctaccagacc
cgcgaaaagtcgctgcgccagcagaagctgaagtcgatctcggccgacgtgatggccggc
ctggcgacccagggcgtcgaagccgatgcggccgaagtcggcaacatcctgttcgacatg
gaagccaaggtcgttcgctcgcagatcctgaacggcgagccgcgcatcgacggccgcgac
acccgcaccgtgcgtccgatcgcgatccgcaccggcgtgctgccgcgtacccacggttcg
gccctgtttacccgcggtgaaacccaggcgctggtggtggccaccctcggcaccgcgcgc
gacagccagaagatcgacgcgctgatgggcgagtacaccgacgacttcatgatgcactac
aacatgcctccgttcgccaccggcgaaaccggccgcgtgggcaccccgaagcgccgcgaa
gtcggccacggccgcctggccaagcgcgcgctggtcgccgcgctgccgtcggcggacgaa
ttcagctactcggtgcgcctggtctcggaaatcaccgagtcgaacggttcctcgtcgatg
gcatcggtgtgcggcggctgcctggcactgatggacgccggcgtgccgatgaaggcgcac
gtcgccggcatcgccatgggcctgatcaaggaaggcggcaagttcgcggtcctgaccgac
atcctgggtgacgaagaccacctgggcgacatggacttcaaggtcgcaggcaccccggcc
ggcatcaccgcgctgcagatggacatcaagatccagggcatcaccaaggaaatcatgcag
gtggcgctggcgcaggccaaggaagcccgccagcacatcctggccgagatgcagaaggcc
gtgccgagcgtgaagaccgaactgtcggacttcgcaccgcgcctgatcaccatccgcatc
aacccggaaaagatccgtgacgtgatcggcaagggcggcgccgtgatccgcgcgctgacc
gaggaaaccggcacccagatcgacatcaccgacgaaggcatcgtgaccatcgcgtcggtc
gatgccgccgccggccaggaagccaagcgccgcatcgaagagctgaccgcatcggtcgaa
gtgggcaagacctacgacggcaccgtgctcaagctgctggacttcggcgcgatcgtccag
gtcatgccgggcaaggacggcctgctgcacatctcgcagatcgccaacgagcgcgtcaac
gccgtggccgactacctgaaggaaggccagcaagtgcgcgtgaaggtcctcgagaccgac
gagcgtggccgcctgaagctgtcgatgaaggctgccgatccggtggagggcgcggcgcag
taa

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