Massilia varians: MasN3_41480
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Entry
MasN3_41480 CDS
T08769
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mvar
Massilia varians
Pathway
mvar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MasN3_41480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvar03019
]
MasN3_41480
03009 Ribosome biogenesis [BR:
mvar03009
]
MasN3_41480
Enzymes [BR:
mvar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MasN3_41480
Messenger RNA biogenesis [BR:
mvar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MasN3_41480
Ribosome biogenesis [BR:
mvar03009
]
Prokaryotic type
rRNA processing factors
MasN3_41480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BDT60654
LinkDB
All DBs
Position
4633977..4637051
Genome browser
AA seq
1024 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSY
GEDRHGFLPFKEVARSYFRDGVDVRNCTIKEALKEGQEIMVQVEKEERGNKGAALTSFIS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDLPQGMSVIARTAGIGRTVEELQ
WDLNYLMQLWRAIEGAGKSAAGPFLIYQESSLVIRAIRDYFQPDIGEVLIDTDEIFDQAQ
QFMSHVMPDMAHRVKRYSDDVPLFSRFQIEHQIETAYARTVPLPSGGAIVIDHTEALVSI
DVNSARATRGSDIETTAFNTNCEAADEVARQLRLRDLGGLIVIDFIDMEVAKNQREVETR
LKEALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQ
VLRIIQEEAMKENSAAIHVQVPVDVAAFLLNEKRGEVLKIENRHRITVILIPNKHLDTPH
YKLERIKHDDPRLEDAAASYTMAESAETDMGFAKRQKEEAKPRQEAVVKTITPAQPAPMV
DRSETAKPAKAAAPAAAAPAPAAPAPSELGFFARIKQFFMGAPVPPAPAPAPSVAEKPAA
PAAAAERGERAGRNGQRTRNGRGAKGGRDRDRDERDLTAKPEEGVKPVEAEAKPARQPRE
KREPREARAPREPREQLDTAAAPRAEREPGERKERAPRQPRGERTERSVQQPVEAKAEEL
KLQAVPAPIEESELSTTTPHGDVLDHAVKVAATGPNGEELDAEGGDEPRRRRRRGGRNRN
RRDRDQAEGIESAEGLDGAPAFTPVADEEAAKVAAAAKAAPKAKAGAQAEPGPWPFPTAA
SVAAKAQAEAAAKAAAAAPAPVAEQAPAAAAPAPAVAVAPGPWPFPTAASIAAARAPKAP
FVQAPVAEAPVTAAAPAPVAEAPAAPAAAAPAAPAPAPAPAPAPAPAPAPVAPAVPAAAA
PAPSVDMNEVLSMAGLQLASTDPEKLRAAQEAAAAANTPPRMGRARKPVQAPVDEPLVQV
DTRQ
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgtttaatgctacgcagcaagaggagctgcgcgtagcgattgtcgac
ggccagaagctgatcgacatcgatatcgagaccgccggtcgcgagcaacgcaagtccaat
atctacaagggtgtcatcacccgcatcgaaccctccctcgaagcctgcttcgtgtcctat
ggcgaagaccgccacggtttcctccccttcaaagaagttgcccgttcttatttccgcgat
ggcgtcgacgtgcgtaactgcacgatcaaggaagccctcaaggaaggccaggaaatcatg
gtccaggtcgagaaagaggaacgcggcaacaagggcgccgcactgacctccttcatctcg
ctggccggccgctacctggtcctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcgtcgagggcgaagagcgccaggaactgcgcgaaaccatggacaagctcgacctgccg
cagggcatgtcggtcatcgcccgcaccgccggcatcggccgcacggtcgaagaactgcag
tgggacctgaactacctgatgcagctgtggcgcgcgatcgaaggcgccggcaagtcggcc
gccggtccgttcctgatctaccaggaaagctcgctggtgatccgcgcgatccgcgactac
ttccagccggacatcggcgaagtcctgatcgacaccgacgagattttcgaccaggcccag
cagttcatgtcgcacgtgatgccggacatggcgcatcgtgtaaaacgctacagcgacgac
gtgccgctgttctcgcgcttccagatcgaacaccagatcgagaccgcctacgcgcgcacc
gtgccgctgccatcgggcggtgcgatcgtcatcgaccataccgaagccctggtgtccatc
gacgtcaactcggcacgcgccacgcgcggctccgacatcgagaccaccgccttcaacacc
aactgcgaagcggccgacgaagtggcccgccagctgcgtttgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaagtggccaagaaccagcgcgaggtggaaacccgc
ctgaaggaagccctgcaccatgaccgtgcacgcgtccagatgggcaagatctcgcgcttc
ggcctgatggaactgtcgcgccagcgcctgcgtccgtcgctgtcggaaggctcgcacgtg
acctgtccgcgctgctcgggcaccggccacatccgcgataccgaatcctcggccctgcaa
gtcctgcgcatcatccaggaagaggccatgaaggaaaactcggccgcgatccacgtgcag
gtgccggtggacgtcgccgccttcctgctcaacgaaaagcgcggcgaagtgctcaagatc
gagaaccgccaccgcatcaccgtgatcctgatcccgaacaagcatctggacaccccgcac
tacaagctcgagcgcatcaagcacgacgacccgcgcctggaagacgccgccgccagctac
accatggcggaatcggccgagaccgacatgggcttcgccaagcgccagaaagaagaagcc
aagccgcgccaggaagccgtggtcaagaccatcaccccggcccagccggccccgatggtg
gaccgcagcgaaaccgccaagccggccaaggccgcagcgccggcagcggcagcgccggcg
ccggccgccccggcaccgagcgagctgggcttcttcgcccgcatcaagcaattcttcatg
ggcgctccggtcccaccggcgccggcaccggcgcctagcgtggccgagaagccggccgca
cccgcggcggcggccgagcgcggcgaacgcgccggccgcaacggccagcgcacccgcaac
ggccgtggcgccaagggcggccgcgaccgcgaccgcgacgagcgcgacctgaccgccaag
cctgaagaaggcgtcaagccggtcgaagccgaagccaagccggcgcgccagccgcgcgag
aagcgtgagccgcgcgaagcccgcgcaccgcgcgagccgcgtgagcagctcgacaccgcg
gcagccccgcgcgccgagcgcgagccgggcgaacgcaaggagcgcgcaccgcgccagccg
cgtggcgagcgtaccgaacgcagcgtccagcagccggtcgaagccaaggccgaagagctg
aagctccaagccgtcccggcgcccatcgaggaaagcgaactgtcgaccaccaccccgcac
ggcgacgtgctggaccacgcggtgaaagtggcagcaaccggcccgaatggcgaggaactg
gatgccgaaggcggcgacgagccgcgccgccgtcgccgccgcggtggccgcaaccgcaac
cgccgcgaccgtgaccaggccgagggcatcgagtcggcggaaggcctcgacggcgcaccg
gccttcaccccggtcgccgatgaggaagccgccaaggtcgccgccgcagccaaggctgcg
ccgaaggccaaggctggcgcccaggctgaaccaggcccgtggccgttcccgaccgccgct
tcggtagcggccaaggcgcaggctgaagccgctgccaaggctgccgccgccgcaccggca
ccggtggccgaacaagctccggccgctgccgcgccggccccggccgtggcagtcgcaccg
ggcccgtggccgttcccgaccgcagcctcgatcgctgcggccagggcaccgaaggcgccg
tttgtccaggctccggtggccgaagcgccggtgaccgcagctgcgccggcgccggtagcc
gaagcaccggccgctccggccgctgctgctcctgctgctcctgctcctgcgcctgcgcct
gcgcctgcgcctgcgcctgctccggcgccggtcgctcctgcagtgcctgccgctgccgca
ccggcaccgtcggtggacatgaatgaagtcctgtccatggccggcctgcaattggcgtcg
accgaccctgaaaagctgcgcgccgcccaggaagccgccgccgcggccaacacgccgccg
cgcatgggccgtgcccgcaagccggtgcaggcgccggtggacgagccgctggtccaggtc
gatacgcgtcagtaa
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