Massilia varians: MasN3_42970
Help
Entry
MasN3_42970 CDS
T08769
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mvar
Massilia varians
Pathway
mvar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MasN3_42970 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvar03019
]
MasN3_42970 (deaD)
03009 Ribosome biogenesis [BR:
mvar03009
]
MasN3_42970 (deaD)
Enzymes [BR:
mvar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MasN3_42970 (deaD)
Messenger RNA biogenesis [BR:
mvar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MasN3_42970 (deaD)
Ribosome biogenesis [BR:
mvar03009
]
Prokaryotic type
rRNA helicases
MasN3_42970 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
adh_short
Motif
Other DBs
NCBI-ProteinID:
BDT60803
LinkDB
All DBs
Position
complement(4796079..4797842)
Genome browser
AA seq
587 aa
AA seq
DB search
MSDTPLPNFADLDLSAPVLKALKDVGYETPSPIQAATIPLLLANRDVLGQAQTGTGKTAA
FALPILSRIDIKQAAPQALVLAPTRELAIQVAEAFQSYAAHIKGFHVLPIYGGQSYGPQL
SALRRGVHVVVATPGRVIDHIEKGSLDLSQLKTLVLDEADEMLRMGFIDDVEHILQQTPP
ERQTTLFSATMPPAIKRIAKTYLRDPQEITVAAKTGTAANITQRYWLVAGMQKLDALTRI
LEAEPFDGMIIFARTKLGTEELATKLQARGFAAVAINGDMAQQARERTIEQLKNGKIDIL
VATDVAARGLDVERISHVINYDVPSDPESYTHRIGRTGRAGRSGEAILFITPRERGLLKA
IERATRQPVAPLQLPTVKAVNDVRIAKFKEQIAATLAEGGLEVFRSLIEEYEREQNVPAV
DIASALAKLARGDQPLLLEKPDREARPERADVVPREQGAWEDRPVRAPREPAFKKERVVR
EAEPGMATFRIEVGHQHGVKPGNIVGAIANEADMPAKYMGRIEIYDDYSTIDLPDDMTQE
LIDHLKTVWVAGQQLNMTRDGLEQPIAAAPKKKFFKKDAGKKPHRKG
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacacccccctcccgaactttgccgacctcgatctttccgcgcctgtactcaag
gcgctgaaggacgtcggctacgaaacgccttcgccgatccaggccgcgaccattccgctg
ctgctggccaaccgtgacgtgctcgggcaggcccagaccggcaccggcaagactgccgcg
ttcgcgctgccgatcctgtcgcgcatcgacatcaagcaggccgcgcctcaggcgctggtg
ctggcgccgacgcgcgaactggcgatccaggtggccgaagccttccagagctacgccgcc
cacatcaagggcttccacgtgctgccgatctacggcggccagagctacggcccgcaactg
tcggcgctgcgccgcggcgtgcacgtggtggtcgccaccccgggccgcgtgatcgaccac
atcgaaaagggttcgctcgacctgtcccagctgaagaccctggtgctggacgaggccgac
gagatgctgcgcatgggcttcatcgacgacgtcgagcacatcctccagcagaccccgccg
gagcgccagaccacgctgttctcggccaccatgccgccggcgatcaagcgcatcgccaag
acctatctgcgcgatccgcaggaaatcacggtggccgccaagaccggcaccgccgccaac
atcacccagcgctactggctggtggccggcatgcagaagctcgatgcgctgacccgcatc
ctggaagccgagcctttcgacggcatgatcatcttcgcgcgcaccaagctcggcaccgaa
gagctggcgaccaagctgcaggcgcgcggcttcgcagccgtcgccatcaacggcgacatg
gcccagcaggcgcgcgaacgcaccatcgagcagctcaagaacggcaagatcgacatcctg
gtggcgaccgacgtcgccgcccgcggcctcgacgtcgagcgcatcagccacgtgatcaac
tacgacgtgccgtccgacccggaaagctacacccaccgcatcggccgcaccggccgcgcc
ggccgcagcggcgaagcgatcctgttcatcacgccgcgcgagcgcgggctgctcaaggcg
atcgagcgcgccacgcgccagccggtggcgccgctgcagctgccgaccgtgaaggcggtg
aacgacgtgcgcatcgccaagttcaaggaacagatcgcggccaccctggccgaaggcgga
ctggaggtgttccgttcgctgatcgaggaatacgagcgcgagcagaacgtgccggcggtg
gacatcgccagcgccctggccaagctggcgcgcggcgaccagccgctgctgctggagaag
ccggaccgcgaggcgcgtcccgagcgcgccgatgtcgtgccgcgcgagcagggcgcatgg
gaagaccgtccggtgcgcgcgccgcgcgaaccggccttcaagaaggagcgcgtggtgcgc
gaggcggagccgggcatggcgaccttccgcatcgaggtcgggcaccagcacggcgtcaag
ccgggcaacatcgtcggcgccatcgccaacgaggccgacatgccggccaagtacatgggc
cgcatcgagatctacgacgactacagcaccatcgacctgccggacgacatgacgcaggaa
ctgatcgaccacctcaagaccgtgtgggtggccggccagcagctgaacatgacgcgcgac
gggctggagcagccgatcgccgcggcgccgaagaagaagttcttcaagaaggacgcgggc
aagaagccgcaccgtaaaggctga
DBGET
integrated database retrieval system
