Massilia varians: MasN3_43520
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Entry
MasN3_43520 CDS
T08769
Symbol
cafA
Name
(GenBank) ribonuclease G
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
mvar
Massilia varians
Brite
KEGG Orthology (KO) [BR:
mvar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvar03019
]
MasN3_43520 (cafA)
03009 Ribosome biogenesis [BR:
mvar03009
]
MasN3_43520 (cafA)
Messenger RNA biogenesis [BR:
mvar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MasN3_43520 (cafA)
Ribosome biogenesis [BR:
mvar03009
]
Prokaryotic type
rRNA processing factors
MasN3_43520 (cafA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
Motif
Other DBs
NCBI-ProteinID:
BDT60858
UniProt:
A0ABM8CC19
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Position
4867602..4869113
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AA seq
503 aa
AA seq
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MYDVALNNTARPAMNEDILINITPQETRVALILQGAVQELHIERTLTRGLAGNVYLGKVV
RVLPGMQSAFIDIGLERAAFLHVADIWEARNHEGPNGALAAPTPIEKLLFDGQVLTVQVI
KDPIGTKGARLSTQISIAGRMLVYLPQDHHIGISQKIEKEADREHLRTRLTSLLPKEEKG
GYIVRTQAEEASDADLAADVDYLRKTWAAIVQGARTRPPTSLLYQDLNLAQRVLRDFVHD
ETATIQVDSRENHAMLVEFAQVYTPSVLSRLTHYTGERPLFDLYGVEEEILRALGRRVDL
KSGGYLIVDQTEAMTTIDVNTGGYVGGRNFADTIFKTNLEAAHAIARQLRLRNLGGIIIL
DFIDMENNEHRNAVLAELKKTLARDRTKVSVSGFSALGLVEMTRKRTRESLAHILCEPCP
ACAGKGQVKTSRTICYEILRELLREAKQFNPREFRIVASQEVIDLFLEEESQHLAMLGDF
IGKRISLQVEKGYHQEQYDVILM
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
gtgtatgatgtcgctctgaacaatactgcacggccggccatgaacgaagacatcctcatc
aacatcaccccgcaggaaacgcgcgtggcgctgatcctgcagggcgctgtgcaggaactg
cacatcgagcgcaccctcacgcgcgggttggcggggaacgtctatctcggcaaggtcgtg
cgcgtgctgccgggcatgcagtcggccttcatcgacatcggcctggagcgcgccgctttt
ctccacgtcgccgatatctgggaagcgcgtaatcacgaaggccccaacggcgccctggcc
gcgcccacccctatcgaaaagctgctgttcgacggccaggtgctgaccgtgcaggtcatc
aaggacccgatcggcaccaagggcgcgcgcctgtcgacccagatttcgatcgccggccgc
atgctggtctacctgccgcaagaccaccacatcggcatctcgcaaaagatcgagaaggaa
gccgaccgcgaacacctgcgcacccgtctgacgagcctgctgccgaaggaagaaaagggc
ggctacatcgtgcgcacccaggccgaggaagcctcggatgccgacctggcggccgacgtc
gactacctgcgcaagacctgggccgccatcgtacagggtgcgcgcacccggccgccgact
tccctgctctaccaggacctgaacctggcccagcgcgtgctgcgcgacttcgtgcacgac
gagaccgcgaccatccaggtggactcgcgcgagaaccacgccatgctggtcgagttcgcg
caggtctacaccccgagcgtgctgtcgcgcctgacccactacaccggcgagcgcccgctg
ttcgacctgtatggcgtcgaggaggaaatcctgcgtgcgctgggccgccgcgtcgacctc
aagagcggcggctacctgatcgtcgaccagaccgaggcgatgaccaccatcgacgtcaac
accggcggctacgtcggcgggcgcaactttgccgacaccatcttcaagaccaacctggaa
gcggcgcacgccatcgcgcgccagctgcgcctgcgcaacctgggcggcatcatcatcctc
gacttcatcgacatggagaacaacgagcaccgcaacgccgtgctcgcggaactcaagaag
accctggcgcgcgaccgcaccaaggtctcggtgagcggcttctccgcactcggcctggtc
gagatgacgaggaagcgcacgcgcgagtcgctggcccacatcctgtgcgaaccctgcccg
gcctgcgccggcaagggacaggtgaaaacctcgcgcaccatctgctacgagatcctgcgc
gaactgctgcgcgaagccaagcagttcaacccgcgcgagttccgcatcgtcgcctcgcag
gaagtcatcgacctgttcctggaagaggaatcgcagcacctggccatgctgggagacttc
atcggcaaacgtatttccttgcaggtggagaagggttaccaccaggaacagtacgacgtg
atcctgatgtag
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