Massilia varians: MasN3_43960
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Entry
MasN3_43960 CDS
T08769
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mvar
Massilia varians
Pathway
mvar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MasN3_43960 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvar03019
]
MasN3_43960 (rhlE)
Enzymes [BR:
mvar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MasN3_43960 (rhlE)
Messenger RNA biogenesis [BR:
mvar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MasN3_43960 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
HNF-1_N
AAA_22
Utp25_C
KCTD_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BDT60902
UniProt:
A0ABN6TF99
LinkDB
All DBs
Position
complement(4932896..4934416)
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AA seq
506 aa
AA seq
DB search
MSDIQNTPVSADSDDITLAAPVEQVKADEAPTVRFTDLGLAPEILRALTDQGYEYPTPIQ
AKAIPLVLQGRDVMGAAQTGTGKTAGFSLPIIQLLMAHANSSMSPARHPVRALVLTPTRE
LAVQVADNVKAYAKHTPLRSTVVFGGMDMKGQTTILKGGVEIVIATPGRLLDHIEQKNIS
LGQVQMLVMDEADRMLDMGFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLANSFLNSPV
LIEVARSNATADRVTQIVYKVDEELKRDVVEHIIRERNLKQVIVFSNTKIGASRLSRHLE
QKGIKASAIHGDKTQQERMAALDAFKAGSVEVLVATDVAARGLDISDLPCVINYDLPYNA
EDYVHRIGRTGRAGASGDALSVYSDKDERLLADIEKLIKQTVPRGELPGFVAPSSRAREG
GRGEFARDGERRGRRDEAPRGGERGERPARSSGYSPTPRREKVDPWFLKPYEPSSAARKE
VVTPTPQAKPGKQKLAFLLGGGPRTN
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatatccagaatactcccgtgagcgccgattccgacgacatcaccctggccgct
ccggtcgagcaggtcaaggcggacgaagcgccgaccgtgcgcttcaccgaccttggcctg
gcgccggaaatcctgcgcgcgctgaccgaccagggctacgagtacccgaccccgatccag
gccaaggcgatcccgctggtgctgcagggccgcgacgtcatgggcgccgcccagaccggc
accggcaagaccgccggcttctcgctgcccatcatccagctcctgatggcgcatgccaac
agcagcatgtcgccggcgcgccacccggtgcgcgccctggtgctgaccccgacccgcgaa
ctggcggtgcaggtggccgacaacgtcaaggcctacgccaagcacacgccgctgcgttcc
accgtcgtgttcggcggcatggacatgaagggccagaccaccatcctgaaaggcggcgtc
gagatcgtcatcgccaccccgggccgcctgctcgaccacatcgagcagaagaacatcagc
ttgggccaggtgcagatgctggtcatggacgaagccgaccgcatgctcgacatgggcttc
ctgcccgacctgcagcgcatcatcaacctgctgccgaagcagcgccagaacctgatgttc
tcggccaccttctcgcccgagatcaagaagctggccaacagcttcctgaacagcccggtg
ctgatcgaagtggcgcgcagcaacgccaccgccgaccgggtcacgcagatcgtctacaag
gtcgacgaggagctcaagcgcgacgtggtcgagcacatcatccgcgagcgcaacctgaag
caggtgatcgtgttctcgaacaccaagatcggcgcgtcgcgcctgtcgcgccacctcgag
cagaagggcatcaaggcctcggcgatccacggcgacaagacccagcaggagcgcatggcc
gccctcgacgccttcaaggccggctcggtcgaagtgctggtggcgaccgacgtggccgcg
cgcggcctcgacatctcggacctgccttgcgtgatcaactatgacctgccgtacaacgcc
gaggactacgtgcaccgcatcggccgcaccggccgcgccggcgcctcgggcgacgcgctg
tcggtgtactcggacaaggacgagcgcctgctggccgacatcgagaagctgatcaagcag
accgtcccgcgcggcgaactgccgggcttcgtggctccctcgagccgcgcgcgcgaaggc
gggcgcggcgagttcgcccgcgacggcgaacgccgcggacgccgcgacgaggctccgcgc
ggcggcgagcgtggcgagcgtccggcgcgcagcagcggctacagcccgacgccgcgccgc
gagaaggtcgatccgtggttcctcaaaccctacgagccgtcgagcgcggcgcgcaaggaa
gtcgtgacgccgacgccgcaagccaagccaggcaagcagaagctggccttcctgctgggc
ggcggaccgcgcactaattga
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