Massilia varians: MasN3_45090
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Entry
MasN3_45090 CDS
T08769
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
mvar
Massilia varians
Brite
KEGG Orthology (KO) [BR:
mvar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mvar03016
]
MasN3_45090
Enzymes [BR:
mvar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MasN3_45090
Transfer RNA biogenesis [BR:
mvar03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MasN3_45090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
BDT61015
LinkDB
All DBs
Position
complement(5052627..5054678)
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AA seq
683 aa
AA seq
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MNVFFEESGDFKVGTVLSQAGEAYQVELASGKRSKVKSKDVLIQFDKPEPEALLAAAKGI
AAEVDLDFLWEVAGQEEFGFAELGLEYFGHAPLPGEAAGLVLALHAAPIYFHKKGRGRYK
AAPEQTLKAALAGIEKKKQQAIVQAGYVEELKAGKLPQSMQSIVHQLLFKPDKNTIEYKA
LEAAASELQTTAPRLMLRTGGLASPKELHMSRFLFEHFPRGAGFPPLEVPQAPSDLPLAD
VAAFSIDDVTTTEIDDAMSVVWLEDGTVRVGIHIAAPGLAIRPDDAIDKIARARMSTVYM
PGDKITMLPDDVVDAFTLAEGTDCPALSLYAVLNPQDWTVLSTTTRAERVPIKRNLRLNE
IDAIVTEEALNTGSGEYEHKKELALLWQWALHLEAGRMQKREAFGLKPEQANRVDFNFYV
DDDVVSIVRRKRGAPLDKIVAELMIFANSTWGKLLHDSGVPGIYRSQGPGAGGWNAKIQV
RMVTHAAPHQGLGVDQYAWSTSPLRRYTDLVNQWQILACASHGVTAPLVAPFKHRDATLF
SIVSAFDAAYAAYNDFQQNMERYWCLRWLGQENAKQVDAVVLKEEVVRLVEIPLVARLAG
MPQLARGAQVKLDIVRWDEVDLSLEARLLEVAAVAPDASLELEEEEEGDTGEAALAEVVE
AEGVVAAVTTEDGVEVPANAGTA
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtattttttgaagagtcgggcgatttcaaggtcggcacggtattgtcgcaggcc
ggcgaggcctaccaggtggagctggccagcggcaagcgcagcaaggtcaagtccaaggac
gtgctgatccagttcgacaagcccgagccggaagcgctgctggccgccgccaagggcatc
gccgccgaggtggacctggacttcctgtgggaggtcgcgggccaggaagaattcggcttc
gccgaactcggtctggagtatttcggccacgcgccgctgccgggcgaggccgccggcctg
gtgctggcgctgcacgccgcgccgatctacttccataaaaagggccgcgggcgctacaag
gccgctcccgagcagaccctgaaggcggccctggccggcatcgaaaagaagaagcagcag
gccatcgtgcaggccggctacgtcgaggaactcaaggccggcaagctgccgcaatcgatg
cagtccatcgtgcaccagctgctgttcaagccggacaagaacaccatcgaatacaaggcg
ctggaagcggccgcctccgagctgcagaccacggcgccgcgcctgatgctgcgtacgggc
ggcttggcgtcgccgaaggaactgcacatgtcgcgcttcctgttcgagcacttcccgcgc
ggcgccggcttccccccgctggaggtgccgcaggcaccaagcgacctgccgctggcggac
gtcgccgccttctcgatcgacgacgtcaccaccaccgagatcgacgatgccatgtcggtg
gtctggctggaggacggcacggtgcgggtgggtatccacatcgcggcgccaggcctggcc
atccgtccggacgatgcaatcgacaagatcgcgcgcgcgcgcatgtccaccgtttatatg
ccgggcgacaagatcaccatgctgccggacgacgtggtggatgccttcaccctggccgaa
ggcacggattgcccggcgctgtcgctgtacgcggtgctgaacccgcaggactggaccgtg
ctgtcgaccaccacccgcgccgagcgcgtgccgatcaagcgcaacctgcgcctgaacgag
atcgacgccatcgtcaccgaagaagcgctgaacacgggcagcggcgaatatgagcacaag
aaggagctggccctgctgtggcaatgggcgctgcacctggaagcgggccgcatgcagaag
cgcgaagccttcggcctgaaacccgagcaggccaaccgcgtcgatttcaatttctacgtg
gacgacgacgtggtgagcatcgtgcgccgcaagcgtggcgcgccgctcgacaagatcgtg
gccgagctgatgatcttcgccaacagcacctggggcaagctgctgcacgactcgggcgtg
ccgggcatctaccgctcgcaggggccgggcgcgggcggctggaacgccaagatccaggtg
cgcatggtcacccatgcggccccgcaccagggcctgggcgtggaccagtacgcatggagc
acctcgccgctgcgccgctacaccgacctggtcaaccagtggcagatcctggcctgcgcc
tcgcacggcgtgaccgcgccgctggtggcgccgttcaagcaccgcgacgcgaccctgttc
tcgatcgtctccgcgttcgacgcggcctacgcggcctacaacgacttccagcaaaacatg
gaacgctactggtgcctgcgctggctgggccaggagaacgccaagcaggtcgacgccgtg
gtgctgaaggaggaagtggtgcgcctggtcgagatcccgctggtggcgcgcctggccggc
atgccgcagctggcgcgcggcgcccaggtcaagctcgatatcgtgcgctgggacgaggtc
gacctgtcgctcgaggcgcgcctgctcgaggtggcggcggtggcgccggatgcttcgctg
gagctggaagaagaggaagagggcgataccggcgaggcggcgctggccgaagtcgtggaa
gccgagggtgtcgtggccgccgttacgaccgaggatggcgtggaagttcccgccaacgcc
ggcaccgcctga
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