Massilia varians: MasN3_47290
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Entry
MasN3_47290 CDS
T08769
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
mvar
Massilia varians
Brite
KEGG Orthology (KO) [BR:
mvar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mvar03016
]
MasN3_47290
Enzymes [BR:
mvar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
MasN3_47290
Transfer RNA biogenesis [BR:
mvar03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
MasN3_47290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
BDT61235
LinkDB
All DBs
Position
5303821..5304336
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AA seq
171 aa
AA seq
DB search
MDGPARTPTTRLFLALWPEPDVRHLLSEWRDAWTWPAGAAPVQADKLHLTLHFLGSLPSD
RLPQLLDGFAVPFEPFRVDLTRAALWHNGIAVLEPTLTPPALAALHARLSDALGALGLQP
ETRRYRPHVTMARRAAGATVPADGAPIVWDVRGYALVASENGVYTVLRAYA
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atggacggaccggcgagaacgcccaccacccgtctgttcctggccctgtggcccgagccg
gacgtgcgccatctcctgagcgaatggcgcgacgcctggacctggccggcgggcgccgcc
ccggtccaggccgacaagctacacctcaccctgcacttcctcggcagcctgccgagcgat
cgactgccccaactgctggacggctttgccgtcccgttcgaacccttccgcgtcgatctc
acccgcgccgcgctatggcataacgggatcgccgtgctcgaaccgaccctgacgccgccg
gccctcgcggccctgcacgcgcgcctgtcggatgcgctgggcgcgctcggcctgcagccg
gaaacgcgccgctaccgcccgcacgtgaccatggcgcgccgcgccgccggcgcgaccgtg
cccgcggacggtgcgccgatcgtgtgggatgtgcgcggctatgcgctggtggcgtcggag
aatggcgtctatacggtgctgcgcgcgtacgcctga
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