Massilia varians: MasN3_47810
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Entry
MasN3_47810 CDS
T08769
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mvar
Massilia varians
Pathway
mvar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MasN3_47810 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvar03019
]
MasN3_47810 (recQ)
03400 DNA repair and recombination proteins [BR:
mvar03400
]
MasN3_47810 (recQ)
Enzymes [BR:
mvar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MasN3_47810 (recQ)
Messenger RNA biogenesis [BR:
mvar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MasN3_47810 (recQ)
DNA repair and recombination proteins [BR:
mvar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MasN3_47810 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
BDT61287
UniProt:
A0ABM8CD88
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All DBs
Position
5352801..5354624
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AA seq
607 aa
AA seq
DB search
MTSEIGARALHVLETVFGYPAFRGQQADIVEHVASGGDALVLMPTGGGKSLCYQIPALLR
EGVGVVVSPLIALMQDQVDALEEVGVRAAFLNSTQTFEETLRIERLVRSGEIDLVYVAPE
RLLTQRCLELFDVSPISLFAIDEAHCVSQWGHDFRPEYIRLSVLHERYPGIPRIALTATA
DLQTREEIAHRLQLDDARKFVSSFDRPNIRYSIVEKTTGRKQLLDFISSEHPQDSGIVYC
LSRKKVEETADFLNEHGIRALPYHAGMEYSQRAANQSRFLREDNITMVATIAFGMGIDKP
DVRYVCHLDLPKSLEGYYQETGRAGRDGLPASAWMAYGLQDVVLQRRMIDESEADETFKR
VLSMKLDAMLGLCETLSCRRMRLLDYFGERSGPCGNCDTCLIPPIQVDGTVPMQKLLSAI
YRVDQRFAAGHVIDVLRGAQTERISQWHHDKLTVYGVGADRSEPEWRAIVRQAIALGFVT
VDHDAFSSLKLTDAARPVLKGEQKVQLRQYQKPVKAKRPSSRAAGSYEELELSRSEQAIF
ERLRTWRMGTAREHGVPAYVVFQDATLREIAKVKPGSLDALRGVSGVGEKKLVSYGDEIV
AIINEMM
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgacaagcgaaatcggcgcgcgcgccctccacgtcctcgagacggtcttcggctatccc
gctttccgcgggcaacaggccgacatcgtcgagcacgtggccagcggcggcgacgcactc
gtcctgatgcccaccggcggcggcaagtcgctgtgctaccagatccccgcgctgctgcgc
gagggcgtgggcgtggtcgtctcgccgctgatcgcgctcatgcaggaccaggtcgatgca
ctggaagaagtcggcgtgcgcgccgccttcctgaactccacccagaccttcgaggaaacc
ctgcgcatcgagcgcctggtgcgcagcggcgagatcgacctcgtctacgtggcgcccgag
cgcctgctgacgcagcgctgcctggaactgttcgacgtctcgccgatctcgctgttcgcc
atcgacgaagcccactgcgtgtcgcagtggggccacgacttccgcccggaatacatccgt
ctgtcggtcctgcacgagcgttacccgggcattccgcgcatcgccctcaccgcgaccgcc
gacctgcagacccgcgaggaaatcgcgcaccgcctgcagctcgacgacgcgcgcaagttc
gtctcgtccttcgaccgcccgaacatccgctattccatcgtcgagaagaccaccggccgc
aagcagctgctcgatttcatcagcagcgagcacccgcaggattccggcatcgtctactgc
ctgtcgcgtaaaaaggtcgaggagaccgccgacttcctgaacgagcacggcattcgcgcc
ctgccctaccatgccggcatggagtacagccagcgcgccgccaaccagtcgcgcttcctg
cgcgaagacaacatcacgatggtggcgaccatcgccttcggcatgggcatcgacaagccc
gacgtgcgctacgtctgccacctggatctccccaagagcctcgagggttactatcaggag
accggccgcgccggccgcgacggcctgccggccagcgcctggatggcctatggtttgcag
gacgtggtgctgcagcgccggatgatcgacgaatccgaagccgacgagaccttcaagcgc
gtgctgtcgatgaagctcgacgccatgctcggcctgtgcgaaaccctcagctgccggcgc
atgcgcctgctcgactacttcggcgagcgctccggtccctgcggcaactgcgacacctgc
ctgatcccgccgatccaggtcgacggcacggtgccgatgcagaagctgctgtcggccatc
taccgcgtcgaccagcgcttcgccgccggccacgtgatcgacgtgctgcgcggcgcgcaa
accgagcgcatcagccagtggcaccacgacaagctcaccgtctacggcgtcggcgccgac
cgctccgaaccggagtggcgcgccatcgtgcgccaggccatcgcgctcggcttcgtcacc
gtggaccacgacgccttcagctcgctgaagctgaccgacgccgcgcgtcccgtgctcaag
ggcgaacagaaggtgcagctgcgccagtaccagaaaccggtcaaggccaagcggccttcg
tcgcgcgctgccggcagctacgaggaactggaactgtcgcgctccgaacaggccatcttc
gagcgcctgcgcacctggcgcatgggcaccgcgcgcgagcacggggtgccggcctatgtg
gtgttccaggatgcgaccctgcgcgagatcgccaaggtcaagccgggctcgctggacgcg
ctgcgcggcgtgtccggcgtcggcgagaagaaactggtgtcgtatggcgacgagatcgtc
gccatcatcaatgaaatgatgtaa
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