Microbulbifer variabilis: MJO52_00645
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Entry
MJO52_00645 CDS
T08656
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mvb
Microbulbifer variabilis
Brite
KEGG Orthology (KO) [BR:
mvb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mvb03016
]
MJO52_00645
Enzymes [BR:
mvb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MJO52_00645
Transfer RNA biogenesis [BR:
mvb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MJO52_00645
Prokaryotic type
tRNA splicing ligases
MJO52_00645
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
USD21683
UniProt:
A0ABY4VEV7
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Position
139980..141209
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AA seq
409 aa
AA seq
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MKPLPYEVMQAGGVPIKSWTLGVPFEEEARAQLKNISQLPFIHKWVAAMPDVHLGKGATI
GSVVPTLGAVIPAAVGVDIGCGMMAVRTSLTAAQLPDNLAGVRSAIERAVPHGRTGRHRG
RGRDKGAWENPPDDALAGWAPLAAQFEVLKEKHSVLKNTNNINHLGTLGTGNHFIEMCLD
EQGSVWLMLHSGSRGVGNRIGTYFIEKAKRDMERWHIHLPDSDLAYFPEGSEHFDDYVRA
VEWAQEFARINREVMMVRTIGAVKQALGMDFEARMEAVNCHHNYVSREQHYGKEVLVTRK
GAVRARVDEMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLVSLEEHRA
ATVDVECRKDEGVIDETPSAYKPIEKVMAAQKDLVEIVYTLKQVVCVKG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccattgccgtatgaagtgatgcaggcaggtggggtaccgattaagtcctggacc
ttaggtgtgccctttgaagaagaagccagggctcagcttaaaaatatttcgcagttgcct
tttatccacaagtgggtggcggcaatgcccgatgtacacctgggcaaaggcgccaccatt
ggcagtgtggtacccaccctgggagcggtaatccccgcagccgtgggtgtggatattggc
tgtggcatgatggcagtccgcaccagcctcaccgcagcacagctgccagacaacctggcg
ggcgtccgcagtgctattgagcgcgccgtgccccacggccgcactggtcggcaccggggt
aggggtcgggataagggggcctgggagaatccgccggacgatgcacttgccggctgggca
ccgttggcagcgcagtttgaggtgctgaaagagaagcactcagtattgaaaaatacaaat
aatatcaatcacttgggaacgcttggtaccggtaatcactttattgagatgtgcctggat
gagcaaggcagcgtgtggctgatgttgcacagcggctctcgtggtgtgggtaaccgtatt
ggtacctactttatcgaaaaggccaagcgggatatggaacgctggcatatccacttgccc
gatagtgacttggcctatttccccgagggtagcgagcatttcgatgactatgtgcgggcg
gtggagtgggcgcaggaatttgctcgcatcaatcgtgaagtcatgatggtacgcactatt
ggcgcggtgaagcaggcactaggtatggattttgaggcgcgcatggaggcggtaaactgc
catcacaattacgtttcccgcgaacaacactatggcaaggaggtactggtaacgcgcaag
ggcgctgtaagggcgcgtgttgatgaaatgggcattattcccggaagtatgggggccaag
tcttttattgtgagggggttaggaaacgaggaaagcttctgcagctgtagccatggtgcc
gggcgggtgatgtcccgcaccaaggcgaaaaaactggtatccctggaagagcatcgcgcg
gctactgtcgacgtggaatgccgtaaagatgaaggtgtgatcgacgaaaccccatcggcc
tacaaacctattgagaaggttatggcagcacaaaaagacttggtggaaatcgtttacacc
ctcaagcaggtagtctgtgtcaaaggatag
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