Microbulbifer variabilis: MJO52_02500
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Entry
MJO52_02500 CDS
T08656
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mvb
Microbulbifer variabilis
Pathway
mvb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mvb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MJO52_02500 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mvb03021
]
MJO52_02500 (rpoC)
03400 DNA repair and recombination proteins [BR:
mvb03400
]
MJO52_02500 (rpoC)
Enzymes [BR:
mvb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MJO52_02500 (rpoC)
Transcription machinery [BR:
mvb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MJO52_02500 (rpoC)
DNA repair and recombination proteins [BR:
mvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MJO52_02500 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
USD22024
LinkDB
All DBs
Position
569952..574181
Genome browser
AA seq
1409 aa
AA seq
DB search
MKDLLNLVKSQEHLEEFDAIRIGLASPDMIRSWSYGEVKKPETINYRTFKPEREGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTEPGMTTLERGQLLNDEQYFEAMEEFADEFEAKM
GAEAIQELMADIELPVEIQRLREEIPATNSETKIKKLSKRLKLLEAFYKSGNNPEWMVMK
ALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFGKLETRGLATTIKAAKKMVEREEAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLES
RALMMSTNNILSPANGEPIIVPSQDVVLGLYWMTRERVNDKGEGMSFSDIKEVSRAFYAK
QVGLQAKVKVRIRENIVGEDGEKHETISVQDTTVGRALLWNIVPEGLPFELVNQPMKKKS
ISRVLNECYRKVGLKATVIFADQLMYTGFDFSTKSGSSIGVNDFEIPAEKAQLIESAEAE
VKEIESQFASGLVTQGEKYNKVIDVWSRTNDKVTQAMMAGIKKERVTDREGKETQQDSFN
SVFMYADSGARGSEAQIRQLAGMRGLMARPDGSIIENAITANFREGLTVQQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITELDCGTDDGLTMAPVIEGGDVIESLGDRIL
GRVVARDVLKPGSDEIAVSAGTMIDEKWVERIEAMGIDEVLVRSPITCTTAHGICAQCYG
RDLARGHRANPGESVGVVAAQSIGEPGTQLTMRTFHIGGAASRASAADSIQVKLGGTVRL
HNVKTVKTEAGNLVAVSRSGELAIADSAGRERERYKLPYGAVISVYEGAEVDGGQIVAKW
DPHTHPIITEVAGWVKLSGMEEGLSIRKQTDEITGLSSIEIIDPAERPAAGKDLRPAVTL
LDENGEELTLANSNAPAHYALPARAILSLKNGDKVNVGDVIARIPQESGGTKDITGGLPR
VADLFEARKPKEPSILAEISGTVSFGKETKGKVRLQITPRDGKPLANGKDHYEVLIPKHR
QLTVFEGETVEKGEVISDGPSNPHDILRLKGVEELARYITNEIQEVYRLQGVGINDKHIE
TIVRQMLRKVEILEMGDSSLIKGDQVEYQRVIEENEQLRAEGKQPAQFERLLLGITKASL
ATESFLSAASFQETTRVLTEAAVTGKEDSLRGLKENVVVGRLIPAGTGLAYHAERKRKRN
LQLEETFGEGPSAAEVEAALTEALKSSGE
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttattaaatctggtgaagtcccaggagcacctggaagagtttgatgcgatt
cgtatcggtctggcctcgccggacatgatccgctcctggtcctacggcgaagtgaagaag
ccggagaccatcaactaccgtaccttcaagcctgagcgtgaaggcttgttctgcgccaag
atcttcggcccggttaaagactacgagtgcttgtgcggtaagtacaagcgcatgaagcac
cgcggtattatctgtgagaagtgcggcgttgaggtcaccaaagccaaggtgcgccgtgag
cgtatgggccacattgaactggccagcccggttgcgcatatctggttcctgaaatccctg
ccatcccgtatcggcctgttgctggatatgaccctgcgcgatattgagcgcgtgctgtac
ttcgaatcctacgtggtaaccgagcccggcatgaccaccctggagcgcggccagctactg
aacgatgagcagtactttgaggcgatggaagagttcgccgatgagtttgaagcgaaaatg
ggtgccgaggctatccaggaattgatggcagatattgaactgccggttgagatccagcgc
ctgcgggaagagatcccggcgaccaattccgaaaccaagatcaagaaactgtccaagcgc
ctgaagctgctggaagccttctacaaatccggtaacaacccggagtggatggtaatgaag
gctttgccggttctgccaccggatctgcgtccgctggtgccgctggatggtggccgcttt
gcgacctccgatctaaacgacctctaccgtcgtgtgatcaaccgtaacaaccgcctgaag
cgtctgctcgagttgaatgcgccggacattatcgtgcgtaacgaaaagcgcatgctgcag
gaatctgtcgatgcactgttggataacggccgtcgcggccgcgctatcaccggctccaac
aagcgcccgctgaagtccctggctgacatgattaaaggtaagcagggtcgcttccgtcag
aacctgctgggtaagcgtgtggactactccggtcgttccgtgatcgtggttggcccgacc
ctacgcctgcaccagtgtggtctgcccaaaaaaatggctctggagctgttcaaaccgttt
attttcggcaagctcgaaactcgcggtctggccactaccatcaaagccgccaagaaaatg
gtggagcgcgaagaggccatcgtttgggatatcctcgacgaggtgatccgcgagcacccg
gtactactcaaccgagcaccgaccctgcaccgtctgggtattcaggcgttcgagccggta
ctgattgaaggtaaggcgatccagctacatccgctggtttgtgctgcctataacgccgac
ttcgacggcgaccagatggcggtacacgtacctttgaccatcgaagcgcagcttgaatcc
cgcgcgctgatgatgtccaccaacaacatcctgtcgcccgccaatggtgagccgatcatc
gtaccgtcccaggacgtggtactgggcctgtactggatgacccgagagcgcgtcaacgat
aaaggcgagggcatgtccttctccgatatcaaagaggtgagccgtgccttttatgccaag
caggttggcttacaggcgaaggttaaagtgcgtatccgcgaaaatatcgtgggtgaagat
ggtgagaaacacgaaaccatctctgtacaggacaccactgtaggccgcgcgctgctgtgg
aatattgtcccggaaggcctgcccttcgagctggttaaccagccgatgaagaagaagtct
atttcccgtgtactgaacgagtgctaccgcaaggtgggcctgaaggcgacggttatcttc
gccgaccagctgatgtacaccggttttgatttctctaccaagtccggttcctccattggt
gtgaacgacttcgaaatcccggcggagaaagctcagttgatcgaatccgcggaagcggaa
gtgaaggaaattgaaagccagtttgcctccggtctggtaacccagggtgaaaaatacaac
aaggtcatcgatgtttggtcccgtaccaacgataaggtgacccaggcgatgatggcgggg
attaagaaagagagggtgactgaccgagagggcaaagagacccagcaggactctttcaac
tctgttttcatgtatgcagactccggtgcacggggctccgaagcacagattcgtcagctc
gctggtatgcgtggtctgatggcccgtccagacggctccattatcgagaacgccattacc
gcaaacttccgtgaaggtctgaccgtacagcagtacttcatctcgacccacggtgctcgt
aaaggtctggcggataccgcactgaaaaccgcgaactctggttatctgacccgtcgcttg
gtggacgttgctcaggacgtggtaattaccgaactggattgtggcactgacgacggcctg
accatggcgccggtgatcgagggcggtgacgttatcgaatctctcggtgaccgtatcctc
ggtcgtgttgtggctcgcgatgtattgaagcccggcagcgatgaaatcgccgtttccgcc
ggcaccatgatcgacgagaagtgggtagagcgcatcgaagccatgggtatcgatgaggtt
ctggttcgctccccgatcacctgtactactgcacacggtatctgtgcccagtgttacggc
cgtgacctggcccgaggccaccgcgccaacccgggtgaatctgtgggcgttgttgccgca
cagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgct
gcgagccgcgcctctgctgcagacagcattcaagtgaagctgggcggtaccgtccgtctg
cacaatgtgaagaccgttaagactgaagctggcaacctggtagcggtttcccgctccggt
gaattggcgattgccgatagcgctgggcgcgagcgcgagcgctacaagctgccttacggt
gctgtaatcagtgtctatgagggtgctgaggttgatggtggccagattgtggccaagtgg
gatccgcacacccacccgatcatcaccgaagttgccggttgggtgaaactgtccggtatg
gaagagggtctctccatccgcaagcagaccgatgaaattaccggtctgtcctcgatcgaa
attatcgatccagccgagcgtccggcggcaggtaaagacctgcgtccggcggtaactctg
ttggatgagaatggcgaagaactgactctggccaacagtaatgcgcctgcgcactacgca
ttgccggcgcgtgcgattctcagcctgaagaatggtgacaaggtgaacgtgggtgacgta
atcgcacgtatcccgcaggaatctggcggtaccaaggacatcaccggtggtctgccccgc
gttgccgacctgttcgaagcgcgtaagccgaaagagccgtccatcctggcggaaatctcc
ggtaccgtttccttcggtaaagagaccaaaggcaaggtgcgtctgcagatcaccccgcgc
gacggcaagccactggccaacggtaaggaccactacgaggttctgattccgaagcaccgc
cagctgactgtgttcgaaggtgaaactgtagagaagggcgaggttatctccgatggcccg
tccaacccgcacgatattctgcgtctgaaaggcgttgaagaactggcgcgctacatcact
aacgagatccaggaagtttaccgtctccagggtgtaggtattaacgataagcacatcgag
actatcgtgcgccagatgctgcgcaaggtggaaatcctggagatgggcgattccagctta
attaagggcgaccaggtggaataccagcgcgtgatcgaagagaacgagcagttgcgcgcc
gaaggcaaacagcccgctcagttcgagcgcctgttgctgggtattaccaaagcgtctctg
gccactgagtccttcctgtctgcggcttcgttccaggagactacccgcgttctgaccgag
gcggcggtaaccggtaaagaagatagcctgcgcggtttgaaagagaacgtggttgtgggc
cgcttgattccggccggtaccggtctggcctaccacgcagaacgcaagcgcaagcgcaac
ctgcagctggaagaaaccttcggcgaaggtccttctgcagcagaggtagaagcggcactg
accgaggccctcaagtcctctggcgaataa
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