Microbulbifer variabilis: MJO52_07165
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Entry
MJO52_07165 CDS
T08656
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mvb
Microbulbifer variabilis
Pathway
mvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MJO52_07165 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvb03019
]
MJO52_07165 (recQ)
03400 DNA repair and recombination proteins [BR:
mvb03400
]
MJO52_07165 (recQ)
Enzymes [BR:
mvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MJO52_07165 (recQ)
Messenger RNA biogenesis [BR:
mvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MJO52_07165 (recQ)
DNA repair and recombination proteins [BR:
mvb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MJO52_07165 (recQ)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
USD22913
LinkDB
All DBs
Position
complement(1606616..1608421)
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AA seq
601 aa
AA seq
DB search
MNSPQHILEHVFGYTHFRDPQEAVINTLMASDDALVLMPTGGGKSLCYQIPALARPGCGV
VISPLIALMQDQVEALQEAGIRAAYLNSSISYDEAQAIENQLLYGELDLLYLAPERLLQP
RTLALLQRVELSLFAIDEAHCVSQWGHDFRADYLQLSCLHEQFPRVPRIALTATADKRTR
AEIALRLDLESARHFVSSFDRPNIQYRIEPKDNQRRQLLQFLKNGQEGQAGVVYCLSRAK
VESTAEWLSQQGYTALPYHAGLPAETRAEHQRRFLREEGVIVVATIAFGMGIDKPDVRFV
VHLDLPKSVEAYYQETGRAGRDGETSIALLLYGLEDVVKLGQMVESSEGSEEHKRHERTR
LNAMLGLCEMTSCRRQALLHYFAETLEQPCGNCDICLEPPATWDGSEAAIKLISCVYRTG
QRFGASHVIDVLRGSDNEKVRKFNHDKLTTHGIGKDFSGSEWKAVVRQLIVRGYLEVEGE
FQGLKLTENCRPLLRGEEKLQLRKLPKKAPRAQTRNTAVLEDLEPGEEPLWLALRSCRKQ
LAEERGVPPYVVFHDATLRGMVKAHPQTHSELLAVSGVGDSKLERFGDAFLAVLRGFPKH
D
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgaattccccacaacatattctcgaacacgtcttcggctatacccacttccgcgatcct
caggaagcggtaatcaatacactgatggccagcgatgacgccctggtacttatgcccacc
ggaggcggcaaatctctgtgctaccagattcctgccttggccaggcccggttgcggcgtg
gtgatctctccactaattgccctgatgcaggaccaggtggaagccctgcaggaagccggt
attcgagccgcctacctcaactcctccatctcctatgacgaggcccaggccattgagaac
cagttgctctacggcgaactcgacttgctctatttggccccggaacgcctgctacaaccc
agaaccttggctcttctccagagagtagaactctcattgtttgccattgatgaggctcac
tgtgtctctcaatggggccatgacttccgcgctgattacctgcaactcagctgtttgcac
gagcagttccccagagtaccgcgcatagcgctgactgctacggcggacaagcgcacccgc
gcggagattgccctgcgcctcgatttggaaagcgcccgacactttgtgagcagtttcgac
cgaccgaatatccaataccggatcgagcccaaggacaaccagcgacgacagctcctgcaa
tttctaaaaaatggacaggaaggccaagcaggcgtcgtgtactgcctgtcccgcgccaaa
gtggaaagtactgccgaatggctcagccagcagggctataccgccctcccttatcatgcg
ggtctgccggcggaaacccgcgctgaacatcagcgtcgctttttacgcgaggaaggggta
atcgtagtcgcaaccattgctttcggtatgggtatcgacaagccggatgtgcgtttcgtt
gtgcatctagacctgcccaaaagcgtcgaggcctactatcaggaaaccgggcgagcggga
cgagatggagaaacctctatagcattactgctctatggcctggaagatgtggtcaaactc
ggacaaatggtggaatcttccgaaggtagtgaagagcacaaacgccatgaacgcacacgc
ctcaatgccatgctggggctatgcgaaatgaccagctgcagacgtcaagcactgttgcat
tattttgctgaaactctcgagcaaccctgtggcaactgtgatatctgcctggagccaccc
gctacctgggatggcagcgaagccgctatcaagttgatttcctgcgtttaccgcacagga
cagcgctttggtgccagtcatgtcattgacgtgctgcgcggctcagataatgaaaaggtt
cgcaagttcaatcacgacaaactcactacccacggcattggcaaggatttcagcggcagt
gagtggaaggctgtggtgcgccaattaattgtaagaggctatttggaagttgaaggtgaa
tttcaggggctcaaactcacagaaaactgccgcccattactgcgtggagaggaaaaactg
caactgcgcaaactccccaagaaagcccctcgcgcgcaaacccgaaatacggcagttcta
gaagacctagagccaggagaggagcccctctggctagcacttcgcagctgccgtaaacaa
ctggccgaagagcgcggggtaccgccttatgtcgtctttcacgatgccaccttgcgcgga
atggttaaagcacacccgcaaacccacagtgaactcctggccgtctccggtgttggcgat
agcaaattggaacgtttcggcgatgcttttctcgccgtacttaggggcttccccaaacat
gattaa
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