Microbulbifer variabilis: MJO52_07910
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Entry
MJO52_07910 CDS
T08656
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mvb
Microbulbifer variabilis
Brite
KEGG Orthology (KO) [BR:
mvb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mvb03016
]
MJO52_07910
Enzymes [BR:
mvb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MJO52_07910
Transfer RNA biogenesis [BR:
mvb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MJO52_07910
Prokaryotic type
tRNA splicing ligases
MJO52_07910
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Ortholog
Paralog
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GFIT
Motif
Pfam:
RtcB
Gam
Motif
Other DBs
NCBI-ProteinID:
USD23045
UniProt:
A0ABY4VGC4
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All DBs
Position
1753066..1754274
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AA seq
402 aa
AA seq
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MPVKIVLNKNAQQGSVPVKIYTDEIEPQALQQLKNIAQLPIVHSHVAAMPDVHLGKGATV
GSVIPTVDAVIPSAVGVDIGCGMNAVRTSLHAHQLPDNLKALREAIEVKVPIGQGRHKMI
SARESACKLLAPGVDRLFEKHPGLLKRLHQPQKTWVTQMGTLGGGNHFIEICLDENNAVW
VMLHSGSRGVGNAIGQHFIQLARKDMAGHIRNLPDKDLAYFSEGNHHLDDYIEAVSWAQE
YARVNREEMMRLVLNCLKNFLPKFTLTSEVINCHHNYVMRERHFEQDIFITRKGAISAKK
DQLGIIPGSMGAKSYIVRGRGIAESFHSCAHGAGRKMSRSAARQRFTRQDLEEQTRGVQC
RKDKGVIDEIPAAYKDIDQVMDNQSDLVEVEHTLRQVICIKG
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtaaaaattgtgctaaataaaaatgcacagcaaggtagtgtgccggtaaaaata
tataccgatgaaatcgagccgcaggccttgcagcagctaaaaaatattgctcagttacca
atcgtacactcccatgttgcggcaatgccggatgtacatttaggaaaaggggcaaccgtt
ggttctgtgatcccaacagtagatgcggtaatcccatcagcggtaggggtggatattggc
tgcggaatgaatgcagtgcgaacttcgttacatgcccatcagttgcctgacaacctgaaa
gcattgcgggaggccattgaggtgaaagtacccattggacagggtcgtcacaagatgatc
agtgccagggaatctgcctgcaaacttttagctcccggtgtggataggttgtttgaaaaa
catcctgggctactaaaaaggctgcatcagccacagaaaacttgggttacccagatgggg
accctgggtggcggcaatcattttattgaaatttgtctggatgaaaataatgcggtttgg
gtgatgctgcactcaggcagtcgaggtgttggcaatgctattggacagcactttatccag
ttggctcgaaaggatatggcaggacatatacgtaatctgccagataaagatttggcttac
ttttccgaaggtaaccaccatcttgatgattacatcgaggcggtaagctgggcccaggag
tacgctagagttaatcgggaagaaatgatgaggttggttttgaattgtctcaaaaatttt
ctgccaaaatttacgctcaccagtgaggtaatcaattgtcatcacaattatgtaatgcgc
gaacgccattttgagcaggatatttttattacccgtaaaggggcgatcagtgcgaaaaaa
gatcagctgggaattattccaggctcaatgggagccaagtcctatattgtgcgtggacgt
ggtattgccgaatcattccactcatgcgctcatggagctggccgcaaaatgagtcgtagc
gcagcgcgccagaggtttaccaggcaggatcttgaagagcagactaggggtgttcaatgc
cgtaaagataagggagtgattgatgaaattccggcggcctataaagatatagatcaagtt
atggataatcagtcagaccttgtcgaagtggagcataccctgcgtcaggtaatatgtatt
aaggggtag
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