Microbulbifer variabilis: MJO52_11720
Help
Entry
MJO52_11720 CDS
T08656
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mvb
Microbulbifer variabilis
Pathway
mvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MJO52_11720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvb03019
]
MJO52_11720
03009 Ribosome biogenesis [BR:
mvb03009
]
MJO52_11720
Enzymes [BR:
mvb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MJO52_11720
Messenger RNA biogenesis [BR:
mvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MJO52_11720
Ribosome biogenesis [BR:
mvb03009
]
Prokaryotic type
rRNA processing factors
MJO52_11720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
USD19751
LinkDB
All DBs
Position
2656896..2659838
Genome browser
AA seq
980 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQWLYDLDIENRTRQQKKANIYKGKITRVEPSLEAAFVDY
GEERHGFLPLKEISREYFLKQPKDIEGRIKIKDVVKEGMEVVVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGDERSELRDALASVDVPSGMGMIVRTAGVGRSGEE
LQWDLNYLLQLWSLIKESADKNSAPEFLFQESNVIIRAIRDYMRDDIGEVIVDDADAFKL
VKGFAEQVMPHYAHKVKFYEDSIPLFNRYQIESQIETAFEREVKLPSGGSIVIDVTEALV
SIDINSSRATKGGDIEETARNINLEAADEIARQLRLRDMGGLVVIDFIDMQSKSNQREVE
KRMEKALSMDRARVQVGRISRFGLLEMSRQRLRPSLGETTFRVCPRCSGQGTIRGTKSLA
LSILRLVEEEAKKERSAEIRAITPVNVATYLLNEKRKAISQIESRNKTRVVVVPNAEIET
PHFEVQRLRDDDTSTLETSYKISGSVEETVTKKEEQPKRPQAQPVVQPLAHTAPAPTPEK
KPEPGLFSRLINAIAELFTSKEEEPKKHQKSQNRGKDYQRNRNRNRNQRSSNRGSRNERQ
ARRKDDRREDSKSDDLREARQTTKSFDERDSGADRGEGQRRRRRRRSGDNRRKDENRGNV
SEGNTNENISQVDESADQDRPARRPSNVRGRPQARRRGRRTENTAATAVAQSQEELNREV
NEAIDEAESEARKSRDTATKNLSEAPVSEAAKPKHKEQKAPEPTQVTEPKPVVKAPEQKP
FAPKVSESQAEVKPVAEASPKAQPAIPNEAPAQQSVTPEKATATREEQPSPTLVTPKASQ
EVQATKVSAPATNVEATAATEDAEETALKEASEAAKASVEQGDAIAREEMMAAEAKASEE
IATPATQGRAGNDPRINPKPLLELAIVTEHRDIGSQQPLDTAQPAAIQHSPRALARPAND
PRVARQVTQANTDHNSAEAG
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgttgatcaacgcaacccagcctgaggagttgcgtgtagcactggtggac
ggccagtggctctatgacctggatattgaaaatcgcacccgtcaacagaaaaaagccaac
atctacaaaggtaaaatcacccgtgtagaaccctcgcttgaagccgcattcgtcgactac
ggtgaagagcgccacggcttccttcccctgaaagaaatttcccgagaatacttcctcaag
caacccaaggacatcgaaggccgcatcaagattaaagatgtcgtcaaagaggggatggag
gttgttgttcaggtagataaggaagagcgcggcaacaaaggcgccgccctcaccacattt
atcagtctcgccgggcgctatctggtactaatgccgaacaacccccgtgccggcggcatc
tcccgtcgcattgagggcgatgaacgctctgagctacgtgacgccctagccagcgtggat
gtcccctctggcatgggcatgattgtacgcaccgccggtgtgggccgcagtggcgaagag
ctgcaatgggatctcaactacctcctgcaactgtggagcttaatcaaagaatcagcggac
aaaaatagcgcgcccgaattcctcttccaggaaagcaatgtaatcatccgggcgattcgc
gattacatgcgcgatgatattggtgaagttattgttgatgatgcggatgcctttaaacta
gtaaagggctttgctgaacaagtaatgccccactacgcccacaaggtaaagttctacgaa
gatagcattccgctcttcaaccgataccaaatcgaaagccagattgagaccgcctttgaa
cgcgaagtaaaacttccctccggcggctcaatcgttattgatgtgactgaagcactggtc
tccattgatatcaactcctcccgcgccaccaaaggcggagacattgaggagaccgcgcgc
aacatcaacctggaagccgccgatgagattgcccgccagctgcgcctgcgcgatatgggc
ggcctggtcgtgatcgactttatcgacatgcaaagcaagtccaatcagcgcgaagttgaa
aagcgcatggagaaagctctcagcatggaccgcgcccgtgtacaagttggccgcatctcc
cgcttcggcttgctggaaatgtcacgccagcgcctgcgcccatctctcggtgaaaccacc
ttccgcgtttgcccccgctgtagcggccaaggcactattcgcggcaccaaatctctggcc
ctctctatcttgcgcctagtagaagaagaggccaagaaggagcgcagcgcagagattcgc
gcaattaccccggtaaacgttgcgacctacctcctcaacgagaagcgcaaggcgatctcc
caaattgagtcacgcaataaaacccgcgtagtggtcgtacctaatgcggaaattgaaacg
ccgcactttgaggttcagcgcctacgcgatgacgacacatctaccctcgaaacctcctat
aaaatatctggaagcgtagaggaaactgtcaccaagaaagaagagcagccaaagcgccca
caagcacagcctgttgtacaaccgctcgcgcacaccgcaccggcaccaactccggagaaa
aaaccggagccaggtctgtttagccgcctgataaacgctattgctgagcttttcaccagc
aaagaagaagagcccaaaaagcatcagaagtcccaaaaccgcggtaaagattaccagcgc
aatcgcaaccgcaatcgcaatcagcgcagtagcaaccgtggcagtcgcaatgaacgccag
gctcgccgcaaagacgatcgccgcgaagatagcaagagcgatgacctgcgcgaagccagg
cagaccacaaagtcgttcgatgagcgtgatagcggagccgaccgcggtgaaggacagcgc
cgtcgccgccgccgccgtagcggagacaatcgccgtaaagatgaaaatcgcggcaacgtc
tccgagggtaacactaacgaaaacatctcacaggtagatgaaagcgccgatcaggatcgc
ccggcacgtcgccccagcaatgttcggggccgtccacaagctcgtcgtcgtggccgccgt
acagaaaacactgccgccacagccgtagctcagagccaggaagagctaaatcgcgaagtc
aatgaagcgattgacgaagcggaaagtgaagccaggaaatccagggataccgcaaccaaa
aacttaagcgaagctcctgtgagtgaggcggcgaagcccaagcacaaagagcaaaaagct
cccgagcccacccaggtaaccgagcccaagcctgtagtgaaggctcctgagcaaaagcct
tttgcgcctaaggtttctgaaagccaagcggaagtaaagccagttgcagaggcctcccca
aaggcacagccagcaatcccaaacgaggcacccgctcagcaatcagtaacacctgaaaag
gctactgcaaccagagaagagcaaccctctcctaccctggtaacccccaaagcctctcaa
gaagtacaagccacaaaagtgtcggcacctgctactaacgtggaggctaccgcagcaact
gaagatgctgaagaaactgccctaaaagaagccagtgaagccgcaaaggcatcggtagag
caaggcgacgctatcgccagagaggaaatgatggctgcagaagctaaagcttctgaggaa
atcgctacgccggcaactcagggacgcgccggcaacgacccgcgcatcaaccccaagcca
ttgctggagttggcaatcgtgacagagcatcgtgacataggctcccagcagccgctagac
accgctcaaccagcggccatccagcacagtcctcgtgcacttgcacgcccagccaatgac
ccgcgtgtggcacgtcaagtaacacaggctaatactgaccacaattctgcagaagcaggc
taa
DBGET
integrated database retrieval system
