Microbulbifer variabilis: MJO52_14355
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Entry
MJO52_14355 CDS
T08656
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
mvb
Microbulbifer variabilis
Brite
KEGG Orthology (KO) [BR:
mvb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mvb03016
]
MJO52_14355
Enzymes [BR:
mvb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MJO52_14355
Transfer RNA biogenesis [BR:
mvb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MJO52_14355
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
USD20253
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All DBs
Position
3233300..3235267
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AA seq
655 aa
AA seq
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MLNADALKQLSQLKTDIRSSKEFAEGRVRGSNGKFGFVELEDGREAFLPPNEMERVFPGD
RVRVSLTEEKKGKLSAELDTLIESQLDYLVGQYVQRGQGHFIQPSQNGLSRWIFLPPKAR
GKAQPGEFIACKINRHPFKDGRAQAKVETVIGKPDIPGIEHAYVVAQFKLPEQFGQPAEA
QAQEISAQLAEVISERQDLSELGFATIDAESTRDMDDALAVTTRNEGWTLHIAIADPSSV
IETGSPLDKEAFERAHSQYLPGETLPMLPRNLCENLFSLVPGELRPALVVHIDINTDGSL
GESRYEFAAIRSQHKLSYIQVSQFIEGDESAVPEEQKQSLHNLAAVFEARSAYRANHSLA
MEDRPDYEIHLDDKRKIARIEKQERNIAQRMVEEAMLATNISIGGKLAELQQGCFSVHLG
FREERMGEVRSLLKELLPEHAEQDLGELPHYLALVKYLESHGDAQMQNLLSVLKRMLRPG
QLDNKAGAHLGLGLEAYATATSPIRKYNDLHNHRVLRAAQQDGPAAALSDEQIEALQDSL
TRGRQANRALEQWLYAQFMQDKVGQAFSGKVTLVNGAGLGVRLDEFGIDGFVRLNGDKKN
LPNFDGKHLTLTYNEQSYQLEQTISVKVSSVDVDKRRISLELLPETSANEMAIEN
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgctgaatgccgacgctctgaaacaactttcacaactgaaaacagatattcgctccagt
aaggagtttgccgagggccgggttcgcggcagcaacggcaaatttggctttgtggagcta
gaagatggacgcgaggcttttttacctcccaatgagatggaacgggttttcccaggtgat
cgtgtccgcgtcagcctcacggaagagaaaaaaggcaagctcagcgctgagctggataca
ctgatcgaaagccaactcgactatctggttgggcaatatgtccaacggggccaggggcat
tttatccagcccagccagaacggcttgtcgcgctggattttcctgcctcccaaggcccgc
ggtaaagcacagccgggagagtttatcgcctgtaaaatcaatcgacacccattcaaagat
ggccgcgcccaggcaaaagtggagacggtcattggcaagcccgatatccccggtattgag
catgcttatgtagtagcgcaattcaaattgcctgagcagtttggccaacctgcggaggcc
caggcgcaagaaatcagcgctcaactcgccgaagtgatctccgagcgccaggatctgtct
gaactgggctttgccacaattgatgcggaaagtacccgcgatatggacgacgccctcgcc
gtcaccacccgcaacgaaggctggaccctgcatatcgccatcgccgacccctccagtgtg
atagaaaccggcagccccctggacaaagaggcgttcgagcgcgctcacagccaatacctg
cccggtgaaaccctacccatgctgccgcgtaacctgtgtgaaaacctgttctccctggta
cctggagaactgcgcccggccctggtggttcatattgatatcaacactgatggcagcctg
ggcgagagccgctatgaatttgctgcgattcgctcccagcacaagctgagctacatccaa
gtgagccagttcattgagggcgacgaatccgccgtaccagaagagcaaaaacaaagtctg
cacaacctggctgccgtttttgaagctcgctctgcctatcgtgcaaatcactccctggcg
atggaagaccgccccgattacgagattcacctcgacgacaagcgcaagatcgctcgtatc
gaaaagcaggagcgcaatattgcacagcgcatggtggaagaagccatgctcgccacaaat
atcagcattggcggcaaactggctgagctgcaacagggctgcttctcggtacacctgggt
tttcgcgaggagcgcatgggtgaggtacgcagcctactcaaagagttactaccggagcat
gcagagcaagacctcggcgaattgccacattacctagccctggttaagtatctggaaagc
catggcgatgcacagatgcaaaacctgttgtcggttctgaagcgcatgctgcgccccggc
caactcgacaacaaagcgggagcgcacctaggtctaggccttgaagcctacgccactgcg
acctcccccattcgcaaatacaacgacctgcataaccaccgggtactgcgtgccgcccaa
caagacggccctgctgcagcgcttagtgacgaacagatcgaagccctacaggacagcctg
acccgcggccgccaggccaatcgtgcgctcgagcaatggctttatgcccaatttatgcag
gacaaggttggacaggcgttcagcggcaaggtcaccctggtcaatggcgccggtctcggt
gtgcgcctggacgaatttggtattgatggatttgttcgcctaaatggggataaaaagaat
ctgccgaattttgacggcaagcaccttacccttacctacaacgaacagagctaccagctg
gaacaaactatcagcgttaaagtttcctctgtagatgtcgataaacgccgcatctccctg
gagctcttacctgaaacttcagcaaacgaaatggctatagagaattaa
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