Microbulbifer variabilis: MJO52_16130
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Entry
MJO52_16130 CDS
T08656
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
mvb
Microbulbifer variabilis
Pathway
mvb02020
Two-component system
mvb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mvb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MJO52_16130
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MJO52_16130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mvb03021
]
MJO52_16130
Transcription machinery [BR:
mvb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MJO52_16130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
USD20590
LinkDB
All DBs
Position
3632576..3634021
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AA seq
481 aa
AA seq
DB search
MKQSLQLKLGTQLTMTPQLQQAIRLLQLSTLDLQQEVQAALDNNPMLEADSEEQSVKVDE
NQPQSEQTPENTTQPVEERELAEGDWDQAIPDELPVDSRWDDIYTNNSGSHELDSSSYER
NSTSIGLQDHLRWQLNLTPLSEQDKWIGENLIDGIAPSGLLGTSVQDVATSLSIDEDEVL
AVLKAIQQFDPAGCGARDLKECLQLQLQQLPRNTPWLSQAQNIIEKHLDLLGKRDFRQLS
RRTRLTEAQLGEAIRLIQTLNPSPGESYGGQEPDYVIPDIVVSRKTLRWHVELNAEITPK
IRINDHYASLVKRADNSRDNNFLRDHLQEARWFMKSLQSRHETLLKVANCIVEKQQGFFE
EGPEAMRPMVLADVAESIGMHESTISRVTTQKYMLTPRGVFELKYFFSSHVSTDSGEDAS
STAIRALIRKLIDAETPRKPLSDNKITLELDKQGIKVARRTVAKYRESMGIPSSSERKRL
V
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagtctctccagctcaagctcggcacacagctgaccatgaccccccagttgcag
caagcaattcgcctactgcaactctccacactcgatctgcagcaggaggtccaggcagca
ctggacaacaacccaatgctggaagcggatagcgaagagcaatccgtcaaggtggatgaa
aatcagccacagtctgaacaaacaccggaaaacacaacacagccggtagaagagcgcgaa
ctggccgagggggactgggaccaggcaattcctgatgagctgcccgtcgactcgcgctgg
gatgatatctacaccaataacagcggcagccacgagttagattcctccagctatgagcgt
aactccacctccatcggccttcaggatcatctacgctggcagctgaacttgaccccctta
tctgagcaggataaatggatcggtgaaaacttaattgatggcatagcccccagcggcctc
cttggtacttctgtgcaggatgtcgccacctctttatcgatcgatgaagatgaggtgctc
gcggttctgaaggctattcagcagtttgatcccgctggctgcggggctcgggatctcaaa
gaatgcctgcaattacaactgcagcagttgccgcgaaataccccttggctaagccaagcg
caaaacattattgagaaacacttggacttacttggcaaaagggattttcgccagttgagt
cgacgcacacgactcactgaagcccagctaggcgaggccattcgcctaatccagacctta
aaccccagtccgggagagagctatggtgggcaagagccggactatgtaattccagatatt
gtcgtttcccgcaaaacccttcgctggcacgtagaattgaatgcagagatcaccccaaag
atccgtatcaatgaccactacgcctccctggtcaagcgtgccgacaactccagagataac
aattttttgcgggatcacctgcaagaagcacgctggtttatgaaaagcctgcagagtcgc
cacgagactttactgaaagtagccaactgtattgtcgaaaagcagcaaggtttttttgag
gaaggtccggaagccatgcgacctatggtgctggcagatgttgctgaatctattggcatg
catgaatcgaccatatctagggtgaccacccagaagtacatgctcacgcctcgcggcgtg
tttgagctcaagtatttcttttcgagccacgtcagcacagactccggtgaggatgcctct
tcaactgctatccgtgcactgatccgcaagctgattgacgcagagaccccgcgcaagccg
ctctcagataacaaaattaccctagagctcgataaacaaggtattaaagtagcccgccgc
actgtggcgaaataccgcgagtcaatgggaattccctcctccagcgagcgaaaacgcttg
gtctga
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