Microbulbifer variabilis: MJO52_18585
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Entry
MJO52_18585 CDS
T08656
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mvb
Microbulbifer variabilis
Brite
KEGG Orthology (KO) [BR:
mvb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mvb03009
]
MJO52_18585 (rlmD)
Enzymes [BR:
mvb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MJO52_18585 (rlmD)
Ribosome biogenesis [BR:
mvb03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MJO52_18585 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
TRM5-TYW2_MTfase
PCMT
Cons_hypoth95
Methyltr_RsmB-F
RrnaAD
MTS
Methyltransf_15
Methyltransf_23
Ubie_methyltran
Methyltrans_SAM
Methyltransf_11
FtsJ
Motif
Other DBs
NCBI-ProteinID:
USD21046
LinkDB
All DBs
Position
complement(4239147..4240511)
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AA seq
454 aa
AA seq
DB search
MSRKPRFITPRKTVKKSLPTQAEACVEKFSHDMRGLARVGKKTVFIDNTLPGEEVRFRYS
AHRARFDEGVTSEIIQASPLRCEPRCPHVSLCGGCSLQHLQVDAQIVEKQKILLDQLARF
GGIKPEEILPPLLAEPYGYRRKARIGIRLVKSAKGKKLVFGFRKKRSNDLTDINECHVLH
PSIAQHIPALKLLVAESEGRAHFSQLEVAVGDDMAALVLRHLQPLSEGDRQRWQDFAKSS
GIHMYIQPGDAASIQPLWPENGENSLSYRLPEFDLSLHFQPMDFFQVNFEVNRQMVSRTV
QLLDPQPGERVLDLFCGLGNFTLPLARRAGEVIGIEGLGALTQRGKDNAELNGLNNVRFH
TADLNEEMVKKAWASDGFDKILLDPPRDGALQAVRGIARFKAQKIVYVSCNPATLARDAG
ELTQLGYRLKQACVMDMFPQTAHVESMAVFELDS
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgagcagaaaaccgcgttttatcactccgcgtaagacggtaaaaaaatctttgcccacc
caggcagaagcctgcgtggaaaaattcagccacgatatgcgcggtcttgcccgtgtgggt
aaaaaaacagtatttatcgataacaccctgcctggtgaagaagtgcgttttcgttatagc
gctcatcgggctcgcttcgatgagggtgttaccagtgagataattcaggcttcgccactg
cgctgtgaaccgcgctgcccccatgtgtccctgtgcgggggctgctccctgcaacacctg
caggtcgatgcgcaaattgtcgaaaaacaaaaaatcctgttggatcagctggcccgtttt
ggtggtattaaacctgaggaaattttacctccattgctagcagaaccttacggttaccgg
cgcaaggcacgtatcggtattcgcctggtgaaatcggcaaaaggtaaaaaactcgttttt
ggttttcgcaaaaagcgcagcaacgatttgaccgatatcaatgagtgccatgttttgcac
ccctccatcgctcaacatattcccgcgctgaagctactggtggcggagagcgaggggcgc
gcgcacttttcccagttggaagtggcggtcggtgatgatatggcggccttagtgttacga
cacctgcagcctttatcggaaggggatcgacagcgctggcaagacttcgctaaatcatca
ggtatacacatgtatatacaacctggtgatgcggcttcgattcagcctctgtggccagag
aatggcgagaattccctcagttatcgtctgccggaatttgacctgagcctgcacttccag
ccgatggatttcttccaggtgaatttcgaggtcaaccgacagatggtgagtcgtactgtg
cagttattggacccgcaacccggcgagagggtgttggatcttttctgcggattgggaaat
ttcaccttgccattggcacgtcgcgccggggaggtcatcggtattgaaggcctgggtgct
ctcactcaaaggggcaaggataatgccgaacttaatgggctgaacaatgtgcgctttcac
actgccgacctgaacgaggaaatggtgaaaaaggcctgggccagcgacggcttcgataaa
attttgctggacccaccgcgcgatggcgccctgcaggcggtgcgtggtattgcccgtttc
aaggcgcagaaaattgtttacgtgtcttgtaacccggcgactctggcgcgggatgcggga
gaattgacgcagctgggttaccgtcttaagcaggcctgtgttatggatatgtttccgcaa
acagcccatgtggaatccatggcggtatttgagctggattcctaa
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