Microbulbifer variabilis: MJO52_18935
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Entry
MJO52_18935 CDS
T08656
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mvb
Microbulbifer variabilis
Pathway
mvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MJO52_18935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvb03019
]
MJO52_18935
Enzymes [BR:
mvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MJO52_18935
Messenger RNA biogenesis [BR:
mvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MJO52_18935
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
CMS1
AAA_22
AAA_25
DUF8086
Motif
Other DBs
NCBI-ProteinID:
USD21114
UniProt:
A0ABY4VGP2
LinkDB
All DBs
Position
complement(4322436..4323902)
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AA seq
488 aa
AA seq
DB search
MLFEDLGLAQEIARAVAEQGYTEPTPIQAQAIPAVMKGSDIMAAAQTGTGKTAGFTLPLL
HRLSQGERARKGQVRALVLTPTRELAAQVFDNVQSYSQYLPMRHAVVFGGVKINPQISRL
RGGADILVATPGRLLDLHNQGAIRFDRLEALVLDEADRMLDMGFIHDIKRVLKILPAKRQ
NLLFSATFSPEIRQLAKGLVKDPLEIDVSPRNSTTKTVRQKLHPVDKARKTKLLSHLIRE
NGWHQALVFSRTKHGANRLVKQLEGDGILAAAIHGNKSQNARTRALADFKAGKVQILVAT
DIAARGIDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGAQGQAVSLVSADEIKQLRDIER
LIGKPIPREEIEDFEPDHQLPASGNPKRGGQQKPGASKRPVGSRNNEGGRDARGNSDERR
GNRGSGRGKSEGRGTGGRNSNATAGKGSNGNRSGGSGRARSAESGRSDGQKPQRAPRRRP
SRGRSESA
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttgaagatctgggccttgcccaggagattgcccgtgccgttgcagagcagggc
tatactgagcccacgccaatccaggcccaggccattccggcggtaatgaagggcagtgat
attatggctgcagcccagacgggcacgggtaagaccgccggttttacattgccgctgttg
caccgcttgagccagggagagcgtgccagaaaagggcaggtgcgcgcattggtactcacc
ccaacccgcgagctggccgcacaggtgtttgataatgtgcagagctatagccagtacctg
ccaatgcgtcatgcggtagtttttggtggcgtgaagatcaatccccagatttcccgactg
cgaggcggtgccgatattctagtagcgacccctggtcgtctattggacctgcacaatcaa
ggggcaatccgctttgatcgcttggaagccttggtcttggatgaagcagaccgcatgttg
gatatgggctttatccatgacattaagagagtgctgaagatcttaccggccaagcgtcag
aatctactcttctcggcaaccttttctcctgagattcgccagctcgccaaaggtctggta
aaggacccgctggagattgatgttagcccgcgaaactccactaccaaaacagtacgacag
aagctccaccctgtggataaggctcgaaaaacaaaactgttaagtcacctgattcgagag
aatggctggcatcaggcactggtatttagccgtaccaaacatggggccaatcggctggtg
aaacagctggaaggagatggcatcctggcagcggctattcacggtaataagagccaaaat
gccagaacccgggctctggcagattttaaagccggtaaggtgcagatcctcgttgcgaca
gacattgctgcacggggtattgatatcgatcaattaccccaggtggtaaatttcgacttg
cccaatgttcctgaagattatgttcaccgtatcggtcgcacaggacgtgcgggcgcccag
gggcaagccgtgtcccttgttagtgccgatgaaattaagcagcttcgcgatattgagcgc
ttaattggcaagccaattccccgcgaggaaatcgaggactttgagccagatcatcagttg
ccagcctctggcaaccccaagcgtggcggccagcaaaaacctggcgccagtaaacgccct
gtaggttcccgaaataatgagggcggacgagatgctcgtggcaatagcgatgagcgccgt
ggtaatcgcggaagtggtcgcggtaaatcagaaggacgtggaaccggtggtcgcaatagc
aatgccaccgcaggtaaaggaagcaatggaaatcgctccggcggttctggcagggctcgc
agcgctgaatcgggtcgcagtgatggccaaaaaccacagagagctccgagacgccgcccc
agtagagggcgttcggaaagcgcttag
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