Microbulbifer variabilis: MJO52_21060
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Entry
MJO52_21060 CDS
T08656
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mvb
Microbulbifer variabilis
Pathway
mvb03420
Nucleotide excision repair
mvb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mvb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MJO52_21060 (uvrD)
03430 Mismatch repair
MJO52_21060 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvb03400
]
MJO52_21060 (uvrD)
Enzymes [BR:
mvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MJO52_21060 (uvrD)
DNA repair and recombination proteins [BR:
mvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MJO52_21060 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
MJO52_21060 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
AAA_30
UvrD_C_2
AAA_12
Motif
Other DBs
NCBI-ProteinID:
USD21515
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Position
complement(4808966..4811170)
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AA seq
734 aa
AA seq
DB search
MDVSQILDPLNDAQREAVAAAPGNQLVLAGAGSGKTRVLVHRIAWLMQVEGASPYSIMAV
TFTNKAAREMRARIEELLGVNTFGMWVGTFHGLAHRLLKAHWQEAKLPQNFQILDSDDQL
RLIKRVQADLGLDDKKWPPRETQWWIGAQKDEGLRPQYINAGADPWLQTMVRIYFAYEEA
CQRGGLVDFGELLLRAHELWLNNDSILAHYRRRFPHILVDEFQDTNTIQYAWLRLLAGEQ
CHITAVGDDDQSIYGWRGAKIENIQHFSTDLREVQTVRLEQNYRSTSTILNAANAVIANN
SGRLGKELWTKGEEGEPIAVYAAYNEQDESRFIVERINDWVRDGNRRDSIAILYRSNAQS
RVLEEGLLREQVPYRIYGGQRFYDRLEIKNALSYLRLISNRNDDTAFERVVNTPTRGIGA
RTVEMVRSFAREQGCSLWQAAKLMLQQRVLAARAGNALQSFLDLINQLAANAEDKELDAI
AEDVIETSGLLEFHGKEKGEKGQTRVENLQELVTACRSFAGVDLPEGEEDEEEIPLLNQF
LDSAALDAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMAGVEENLFPHKMSAQEPGRMEE
ERRLCYVGITRAMCKLYITYAENRRLFGSETYNSPSRFIGEIPPNLVHEVRLKTEISRPL
YQADYGKVGQFSDPAPDFDDLPPLALGGRVEHVRFGEGTVVQFEGNGPRTRVQVNFDDVG
SKWLVVAMAKLQPL
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatctcagattttagaccccctcaacgacgcccagcgcgaagcggtagctgcc
gcgcccggcaatcaattggttctggccggtgccggctcgggcaagacccgggtgctggta
caccgcatcgcttggctaatgcaggtggagggcgcctcgccctactccattatggcggtg
acctttaccaacaaggcggcccgcgagatgcgcgcccgtatcgaagagttgctgggggtg
aatacctttggcatgtgggtgggcactttccacggcctggctcaccgcctgctcaaagcc
cactggcaagaagccaagttgccgcagaacttccagattctggattccgacgaccagctg
cgcctgatcaagcgggtacaggcagatctggggctggacgataaaaagtggccgccgcgg
gaaacccagtggtggattggcgcgcagaaagatgaaggcctgcgcccgcaatatatcaat
gccggcgccgatccctggttgcagaccatggtgcgcatctacttcgcctatgaagaggcc
tgtcagcgcggtgggctggtagattttggcgagttgctgctgcgcgcccacgaactttgg
ctgaataacgacagtattctggcccactaccgccggcgtttcccccatatcctggtggat
gagttccaggataccaacacgattcaatacgcttggttgcgcctgctcgcaggggaacag
tgccatatcaccgctgtgggtgacgatgaccagtccatttacggttggcgcggcgccaag
atcgagaatatccagcacttttctacagatctgcgtgaagtgcagacggtacgcctggag
cagaattatcgctccacctccaccattctgaatgcggccaacgcggtgatcgccaataac
agcggtcgtctgggcaaggagttgtggaccaagggggaagaaggcgagcccatcgccgtc
tacgccgcctacaacgagcaggatgagtcgcgctttatcgtcgagcgtatcaatgattgg
gtgcgcgatggcaatcgccgcgacagcattgccatcctctaccgctccaacgcccaatcc
cgggtgcttgaagaggggctactgcgcgaacaggtgccctaccgtatctacggtggccag
cgcttctacgatcgcctggaaatcaaaaatgccctgtcctacctgcgcctgatcagcaat
cgcaatgatgacactgcatttgaacgggtggtgaatacccccactcgtggcattggtgcg
cgcacggtggaaatggtgcgctcctttgctcgcgagcagggctgttccttgtggcaggcg
gccaagctgatgttgcaacagcgcgtactggctgcgcgcgccggtaatgctctgcagagc
tttctggatctgatcaaccagctggctgcaaatgcggaagataaagagctggatgccatt
gccgaggatgtgatcgagactagcggcctgctggaattccacggcaaagaaaaaggtgag
aagggccagacgcgggtggagaacttgcaggaattggtcactgcttgtcgctcttttgcc
ggtgtggacctgcccgagggggaggaagatgaggaggaaatccctcttcttaaccagttc
ctcgacagcgccgccctcgatgccggtgaaggccaggcggatgagtttgaagatgccgtc
cagctgatgaccctgcactctgccaagggcctggaatttcctttggtgtttatggcgggc
gtggaggaaaacctgttcccccacaagatgtctgcacaggagcccggccgtatggaggaa
gagcggcgcctctgctacgtgggtatcacccgcgccatgtgtaaactgtatattacctac
gcggaaaaccggcgcctgtttggcagcgagacctacaacagtccgtctcgctttatcggt
gagattccgccaaatttggtgcacgaagtgcgcttgaagaccgaaatttcccgtcccctc
taccaggcggattatggcaaggtgggccagttttccgacccggcgccagatttcgatgat
ttaccaccattggcactgggtggccgggttgagcatgtcaggttcggcgagggcaccgta
gtgcagttcgaaggtaatggcccccgtacacgtgtacaggtcaatttcgatgatgttggc
agtaaatggctggtagtggctatggctaagctgcagcctttatag
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