Methanosarcina vacuolata: MSVAZ_0855
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Entry
MSVAZ_0855 CDS
T03815
Name
(GenBank) DNA double-strand break repair Rad50 ATPase
Organism
mvc
Methanosarcina vacuolata
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Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_27
AAA_23
SMC_N
UPF0242
ANC1_spectrin
AAA_29
Tetraspanin
Motif
Other DBs
NCBI-ProteinID:
AKB43124
UniProt:
A0A0E3Q3Q3
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Position
complement(1061546..1065400)
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AA seq
1284 aa
AA seq
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MKINAIHIDGFGKFSSLSMEDLPAGLVIFTGANEAGKSTLFTFIRRMFFGIPNTRLCNLY
PPLGGGKHGGRLAVIDSIGDRWVIERNAGRKEDVKVVLPDGNTGGKVELIKLLGHADRNV
FENIYAFGLEELQSFETLNDQSINSKLYSAGTGVGVSISGLMNSISSIETNLYRPRGSKP
LINELFREIGKTEVKITELEGTQKKYDSLHFELEQKTLEIAQLKEKSQNIREKLNDIQNL
LSVWEDWEILCESKTALESLPGLGSFPEKGEEKLKRLQERIEEIRETISRLQQDLDKNAV
KERSLSPDESLLKQKDAVLELGSGIEKYRSEEKLLPSLEMNLRQEKAGFSELLLELGPAW
DEKALELFDRSIPAKEAVIQMRRSVDEIEDKIKETRNELQQVLNSIERVLQENDLFEESL
LVHRDQVIELGNGIEKYQSDKEFLLSGTQELQDRKAELRENLSGLGEGWDENALDLFEHS
IPSKETVFRKRREMDEAEKTIERYRDRLKLALGEIKDVCEEIEALKEKLEVYPTLPRPEE
VKQELEAVSYLRVAHPLLREKEGELKSLEKEEMLFAALRPRETENKDGLPLWPAGMVLLA
GCIGLVYESISGTMFSGLVIFLLLFATSAVYFLKATNKSSVHLAGEEHLEDVESRKQNVK
DSKEKLFREINSLKASMKTRAKKCGFEDIPDPSVREQKADELQRVVVELKTTWELRQREE
KLQKKLDKLNASYIELKDTIRAQEAKQEEVLQEWKGWLTSSGLSPEFSPEHVIEILSAIR
ACLEKQKNINELEKQVTLKEATVKKYEEKACSILEACRKPISGIALESEIAKLREDVSFA
FNQAERVRKLEAESEGLNRKKEELETRFLEETKARDALAEKWTGWLGTYGLDPSLSVESV
LEIFSVIRTCFDKQRAIRKLEEQIASSRTSIEAYEAKVAGVLQVCGRSLSGISFDSQVEK
LRSDLEKASDETRNLQQLKTRSEELKIELEAALDKYKEAAEELAVLLNSGSAETGEEFYE
NARLWAQRTELENRKREAEQQIQRVSVGEKDYGVFVEELQDSDLSGLKEENHSLEECLKA
LEQETSDTIDRRGAIRNQIEQLEQGSEGSLARVMQESLLEELHEKSREWASLVLAREILA
KAVKVYEKERQPAVIVEAQAFFSKITRGRYTRIYSPLNSTEIYVEDRNGRQKSIQELSRG
TAEQLYLSLRFGFIREFGRHSESLPIVFDDVLVNFDPERCKSTCEAIKDLASDNQIFYFT
CHPETVQMLVESFPEIRAVDLDAV
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattaatgccatccatattgatggtttcggcaagttttccagcttgtcgatggaa
gacctgcccgccggcctggtcatttttacgggagcaaacgaagcaggaaaatcgacatta
tttacttttatccggaggatgtttttcggtattcccaacacaaggctctgcaacctctat
cctccacttggaggaggaaagcatgggggaaggcttgcagtcatcgattctattggagac
cgatgggtcatcgaaagaaatgcgggcagaaaagaagatgtaaaggttgtgcttccagat
gggaatacagggggtaaagttgaacttattaaactgctgggccacgcagacagaaatgtc
tttgaaaatatctatgcttttggccttgaagaactgcagagttttgagaccctgaacgac
cagagcatcaacagtaaactctacagtgcaggcacaggagttggagtttcgatttcagga
ctgatgaactctatcagcagcattgaaaccaacctgtataggcctagaggtagtaaacct
cttataaatgagctgttcagggaaatagggaaaactgaagtaaaaattaccgaacttgaa
ggaacccagaagaaatacgattctcttcattttgaactggaacagaaaaccctggagatt
gcccaactaaaagaaaagtctcagaatataagggaaaaattaaacgacattcaaaacctg
ctttccgtctgggaagactgggagatcctctgtgagtcaaaaactgcacttgaaagctta
cctgggcttgggagtttccccgaaaaaggggaagagaagcttaagaggctccaggaaaga
attgaagagataagggagaccatttcaaggctgcagcaggacctggataaaaatgccgtt
aaagaacgaagcctttcccctgacgaaagccttctgaagcaaaaagatgcggtgctggaa
ctgggaagcggaattgagaagtacaggtctgaagaaaaactgctcccttctctggaaatg
aacctcaggcaggaaaaagccgggttttctgagcttcttctggaacttggtccggcctgg
gatgagaaagctctggagctttttgaccgttctattcctgcaaaggaagccgtcattcag
atgagaaggtcagtagacgaaattgaggataaaataaaagagaccagaaacgaactccag
caggtccttaacagcattgaaagagtccttcaggaaaacgacctttttgaagaaagcctc
ctcgtacacagagaccaggttatcgaacttggaaacggaatcgaaaaataccagtctgat
aaagagtttctcctttccggaactcaggaacttcaggatagaaaagcagaactcagggaa
aatctgtcagggcttggggaaggatgggacgaaaacgcccttgatctttttgagcactca
atcccttcaaaagaaactgtattccgaaaacgaagggaaatggacgaagcagaaaaaaca
attgagagataccgcgacaggctcaaacttgcccttggggaaattaaagacgtctgtgag
gaaatcgaagccctaaaagagaaacttgaggtatacccgactcttcccaggcctgaagag
gtgaagcaggagcttgaagctgtaagttatctcagggtggcccaccctctcctgagggaa
aaagaaggcgaactcaaaagcctggaaaaagaagagatgctttttgcagctttaagacct
cgggaaaccgaaaataaggatggtctacccctctggcctgcaggaatggttctgcttgca
ggctgcattggcctggtatacgaaagcattagtggcaccatgttttccggacttgtcata
tttttactccttttcgcgacttctgcggtatacttcttaaaagctactaataagtcctca
gtccaccttgcaggggaagagcatctggaagacgttgagtcccgaaaacagaacgtaaag
gactcaaaggaaaagctgttcagagagattaattcactgaaagcatccatgaaaacccgt
gcaaaaaagtgtggctttgaagacattcctgacccctcagtacgggaacagaaagccgat
gagctgcagagggtcgtggttgagttgaagactacctgggagctgcgccagagggaggag
aagctccagaagaagctggataagttaaatgcaagttatatagaacttaaagatactatc
cgggcacaagaggcaaagcaggaagaagttctccaggaatggaaagggtggcttacttct
tcagggctcagcccggagttctctcctgagcatgtgattgagatcctttctgcaatcagg
gcttgcctggaaaaacaaaagaatataaacgaactggaaaagcaggtaacgctcaaagaa
gccactgttaaaaagtacgaagaaaaagcctgtagtattctggaggcttgcagaaagcct
atttcgggaattgcacttgaaagtgaaatcgcaaagctcagggaggacgtgagtttcgca
tttaaccaggccgaaagagtgagaaaacttgaggctgagtccgaaggccttaaccgtaaa
aaagaagagctggaaacccggttccttgaggagacaaaggcacgtgatgcactggcagaa
aagtggactggctggcttgggacttacgggcttgacccttcactttcagtagaaagtgtg
cttgaaatattttcggtaattcggacgtgctttgacaagcagcgggcaatccggaaactt
gaagaacagatagcttccagcagaacatcgatagaagcctatgaagcaaaggtagcggga
gtattgcaggtatgtggacgttcactttccggaatctcttttgactcccaggttgaaaaa
cttcgttcagaccttgaaaaggcatccgatgagacaagaaacctgcagcaactgaaaacc
agatctgaagaacttaaaattgaacttgaggcagccctggataaatataaagaagctgct
gaagagcttgcagttcttctgaactccggttctgcagagaccggagaagaattctatgaa
aacgcccggctctgggctcagcggaccgaactggaaaacagaaaaagagaagctgaacag
cagatccagagggtttccgtaggcgaaaaggattacggggttttcgtagaagaactgcaa
gattctgatctttcaggcctgaaagaagaaaaccacagtctggaagaatgcctgaaagca
ctggaacaggagacctcggatactatagacaggcgtggagcgatacgaaatcagattgaa
cagctcgaacaaggaagtgaaggttcccttgcaagagtaatgcaggaaagcctgctggaa
gaacttcacgaaaagtcaagggaatgggcttctctagtcttagcccgtgagatccttgct
aaagcagtcaaagtctatgaaaaggaaaggcagcctgcagttatcgtggaagcccaggct
tttttctcaaagattaccagaggcaggtacacgaggatttattccccactcaactctacc
gaaatctatgttgaagaccggaacggacgccagaagagcattcaggaactcagtagggga
acggctgaacagctttatctctccctgcgctttggtttcatcagggaattcggcaggcat
tcggaatctctcccgattgtttttgacgacgtgctggtgaattttgaccctgaacgctgc
aaaagcacatgtgaagccataaaggaccttgcatcagataatcagattttttatttcact
tgccatcctgaaaccgtacagatgcttgtagaaagttttcctgaaatcagggctgtagat
cttgatgcggtataa
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