Methanosarcina vacuolata: MSVAZ_1160
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Entry
MSVAZ_1160 CDS
T03815
Name
(GenBank) Ribonuclease PH
KO
K11600
exosome complex component RRP41
Organism
mvc
Methanosarcina vacuolata
Pathway
mvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSVAZ_1160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvc03019
]
MSVAZ_1160
Messenger RNA biogenesis [BR:
mvc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSVAZ_1160
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MSVAZ_1160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AKB43429
UniProt:
A0A0E3Q4W6
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All DBs
Position
complement(1431708..1433231)
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AA seq
507 aa
AA seq
DB search
MSGKSVKLINDDGLRLDGRHADEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGVFGPREV
HPRRSQRADTAVIRYKYNMASFSTEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTA
IDIFVEVLQADAGTRTAAINASSIALADAGIPMKGLVTSCAFGKVDGQIVLDLNKEEDNY
GEADFPVAMTQDGEITLLQMDGNLTPDEIRKGFELVKKGCKEILEIQQAVLRKKFETPVE
EPEVETAEEAKETELEVVETEPSLEYASEAAFVEEIVEEAEEPEEGLSEETVEACAVNEE
APECEKLEEIIKDAEAEVIEGEAIEEVIEAEEEAEEEAEEEAEEEAEEEEVEEEEVEEEE
AEEEEVEEEEGEEEEGEEEEGEEEEAEEEEGEEEEAEEEEAEFEETVSGEKVEAEPEIEE
FAEEEAETQLEEEAEVEEEVQLEEETGIEEAASEETFESEPEIESKAKSRKGAPVEQPVE
EPEEECKGPWKVVKDPSESGSRGETDE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtaaatctgtaaaattaatcaatgacgatgggctgcgccttgacgggaggcat
gcggatgagataaggcccatgaaaattgagatcggcgttctttcgcgagccgacggttca
tgttatcttgaatggggaaggaacaaagtcctcgtaggtgtgtttggcccaagagaagtt
catccccgtcgttcacagcgcgcagatactgcagttatccgttataaatataatatggct
tctttttccactgaagaccgcgccagacccggacccagcagacggagcattgaaatttca
aaagtttccagggaagcttttgaaccggtgattatggcagagcttttcccgaaaactgca
atcgatatttttgtggaagtacttcaggctgatgcagggacaaggacagcagcaattaat
gcctcaagcatagcgcttgcagacgcaggcattcctatgaaaggcctggttacttcctgt
gcttttggaaaagttgacgggcagatagtgcttgacctcaataaagaagaggacaattat
ggagaggctgattttcctgttgcaatgacccaggatggagaaattaccctgcttcagatg
gacggaaatctaactcctgatgaaattcgaaaaggcttcgagcttgtgaagaaaggctgc
aaagaaatccttgaaattcagcaggcagtgctgaggaaaaagtttgagactcctgttgaa
gaacctgaagtcgaaaccgctgaagaggctaaagagactgagctcgaagttgtagaaact
gaaccttctcttgaatatgcttccgaagcagcatttgtagaagagattgttgaggaagct
gaggaacctgaagaggggctctccgaagaaaccgttgaagcctgtgctgttaatgaagaa
gctcccgagtgcgagaagcttgaagagatcattaaagatgccgaggctgaagtaatagaa
ggagaagctatagaagaagtaattgaagctgaagaagaagctgaagaggaagctgaagaa
gaagctgaagaggaagctgaagaagaggaagttgaagaagaggaagttgaagaagaggaa
gctgaagaagaggaagttgaagaagaggaaggtgaagaagaggaaggtgaagaagaggaa
ggtgaagaagaggaagctgaagaagaagaaggtgaagaagaggaagctgaagaagaggaa
gctgagtttgaagaaactgtttccggagaaaaagtcgaagccgagcccgagatagaggaa
tttgctgaagaggaagccgaaactcagcttgaagaggaggcagaggttgaagaagaagtg
cagcttgaagaagaaaccgggattgaagaagctgcttcagaagaaacttttgaatccgaa
ccagagattgagtccaaagctaagtccaggaaaggggctcctgtcgaacagcccgtagaa
gagcctgaagaagaatgcaaagggccctggaaggtagtaaaagacccatctgaatccgga
agcagaggtgaaaccgatgagtga
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