KEGG   Methanosarcina vacuolata: MSVAZ_1160
Entry
MSVAZ_1160        CDS       T03815                                 
Name
(GenBank) Ribonuclease PH
  KO
K11600  exosome complex component RRP41
Organism
mvc  Methanosarcina vacuolata
Pathway
mvc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mvc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSVAZ_1160
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mvc03019]
    MSVAZ_1160
Messenger RNA biogenesis [BR:mvc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MSVAZ_1160
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     MSVAZ_1160
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: AKB43429
UniProt: A0A0E3Q4W6
LinkDB
Position
complement(1431708..1433231)
AA seq 507 aa
MSGKSVKLINDDGLRLDGRHADEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGVFGPREV
HPRRSQRADTAVIRYKYNMASFSTEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTA
IDIFVEVLQADAGTRTAAINASSIALADAGIPMKGLVTSCAFGKVDGQIVLDLNKEEDNY
GEADFPVAMTQDGEITLLQMDGNLTPDEIRKGFELVKKGCKEILEIQQAVLRKKFETPVE
EPEVETAEEAKETELEVVETEPSLEYASEAAFVEEIVEEAEEPEEGLSEETVEACAVNEE
APECEKLEEIIKDAEAEVIEGEAIEEVIEAEEEAEEEAEEEAEEEAEEEEVEEEEVEEEE
AEEEEVEEEEGEEEEGEEEEGEEEEAEEEEGEEEEAEEEEAEFEETVSGEKVEAEPEIEE
FAEEEAETQLEEEAEVEEEVQLEEETGIEEAASEETFESEPEIESKAKSRKGAPVEQPVE
EPEEECKGPWKVVKDPSESGSRGETDE
NT seq 1524 nt   +upstreamnt  +downstreamnt
atgagtggtaaatctgtaaaattaatcaatgacgatgggctgcgccttgacgggaggcat
gcggatgagataaggcccatgaaaattgagatcggcgttctttcgcgagccgacggttca
tgttatcttgaatggggaaggaacaaagtcctcgtaggtgtgtttggcccaagagaagtt
catccccgtcgttcacagcgcgcagatactgcagttatccgttataaatataatatggct
tctttttccactgaagaccgcgccagacccggacccagcagacggagcattgaaatttca
aaagtttccagggaagcttttgaaccggtgattatggcagagcttttcccgaaaactgca
atcgatatttttgtggaagtacttcaggctgatgcagggacaaggacagcagcaattaat
gcctcaagcatagcgcttgcagacgcaggcattcctatgaaaggcctggttacttcctgt
gcttttggaaaagttgacgggcagatagtgcttgacctcaataaagaagaggacaattat
ggagaggctgattttcctgttgcaatgacccaggatggagaaattaccctgcttcagatg
gacggaaatctaactcctgatgaaattcgaaaaggcttcgagcttgtgaagaaaggctgc
aaagaaatccttgaaattcagcaggcagtgctgaggaaaaagtttgagactcctgttgaa
gaacctgaagtcgaaaccgctgaagaggctaaagagactgagctcgaagttgtagaaact
gaaccttctcttgaatatgcttccgaagcagcatttgtagaagagattgttgaggaagct
gaggaacctgaagaggggctctccgaagaaaccgttgaagcctgtgctgttaatgaagaa
gctcccgagtgcgagaagcttgaagagatcattaaagatgccgaggctgaagtaatagaa
ggagaagctatagaagaagtaattgaagctgaagaagaagctgaagaggaagctgaagaa
gaagctgaagaggaagctgaagaagaggaagttgaagaagaggaagttgaagaagaggaa
gctgaagaagaggaagttgaagaagaggaaggtgaagaagaggaaggtgaagaagaggaa
ggtgaagaagaggaagctgaagaagaagaaggtgaagaagaggaagctgaagaagaggaa
gctgagtttgaagaaactgtttccggagaaaaagtcgaagccgagcccgagatagaggaa
tttgctgaagaggaagccgaaactcagcttgaagaggaggcagaggttgaagaagaagtg
cagcttgaagaagaaaccgggattgaagaagctgcttcagaagaaacttttgaatccgaa
ccagagattgagtccaaagctaagtccaggaaaggggctcctgtcgaacagcccgtagaa
gagcctgaagaagaatgcaaagggccctggaaggtagtaaaagacccatctgaatccgga
agcagaggtgaaaccgatgagtga

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