Methanosarcina vacuolata: MSVAZ_1329
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Entry
MSVAZ_1329 CDS
T03815
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mvc
Methanosarcina vacuolata
Pathway
mvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSVAZ_1329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvc03019
]
MSVAZ_1329
03009 Ribosome biogenesis [BR:
mvc03009
]
MSVAZ_1329
Enzymes [BR:
mvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSVAZ_1329
Messenger RNA biogenesis [BR:
mvc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSVAZ_1329
Ribosome biogenesis [BR:
mvc03009
]
Prokaryotic type
rRNA helicases
MSVAZ_1329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
CMS1
Utp25_C
AAA_19
P-loop_SecA
V-ATPase_H_C
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AKB43598
UniProt:
A0A0E3Q5C4
LinkDB
All DBs
Position
complement(1675897..1677105)
Genome browser
AA seq
402 aa
AA seq
DB search
MNNFKKLGLNNAVLKSIDEHGFESPTAVQEKSIPLILAGEDVIAGAATGSGKTLAFASGI
LQNSEKGKGIQALILTPTRELAEQVANSFRKFSKYDPLNIASIYGGVGINPQIKELKNAE
VVVGTPGRLLDHISRNTIKLNNMKTLVLDEADHMFDMGFKVDVEKIIKECPQNRQTLLFS
ATITKDIVRLSRKYMENPVRVSVESYIDPQKLNQVVYKVQDDMKLSLLVYLLQNEKSNLG
MVFCNTKRNTEKVAKNLRKSSINAVAIHGGLTQNERTRIMEKFHSGNICVLVCTDVAGRG
LDIRGVSHVYNYDIPRESKQYIHRIGRTARAGAEGKAINILSKNDHANFMSVLKDNDVDI
KEQALPALKKIVIERPEIRLPKPVNRMNNPSRKGHKPRHKNC
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgaataattttaaaaaactaggtctcaataacgctgttttgaaatcaatagatgaacat
ggctttgaaagccctacagcagtacaggaaaaatcaattcccctaatacttgctggggaa
gatgttatagccggagccgcaacaggttccggaaaaacactcgcatttgcttccggcata
ttacaaaattccgaaaaaggaaaaggaattcaggctttgatcctgacccctacaagagaa
ctggcggagcaggtggcaaattctttcaggaaattctcaaaatacgacccgttaaatatc
gcatctatctatggcggtgtagggatcaatccacaaattaaagaattaaagaatgccgag
gttgttgtgggaacacccggtaggctactcgatcatatcagcagaaataccatcaaactc
aataatatgaaaacccttgtccttgatgaggcagaccatatgtttgatatgggattcaaa
gtggatgtagaaaaaattatcaaggaatgtcctcaaaacaggcagacccttttgttctct
gcgaccattacaaaagatattgtccggctttcccgcaagtacatggaaaacccggttcga
gtttcagtagagtcttatatcgacccgcaaaaattgaatcaggtcgtttataaagtacaa
gatgacatgaaattatctctgctcgtgtaccttctgcaaaatgagaagtcaaacctcggg
atggttttctgcaacacaaaaagaaacactgaaaaagtcgcaaaaaacctgagaaaatca
agtatcaatgccgtagcaattcatggcggtttgacacagaacgaacgaactcgcataatg
gaaaaattccattccgggaacatatgtgtccttgtatgcacagatgtagccggaagaggg
cttgatatacggggtgtttcccatgtttacaattatgatattcccagggagagtaaacag
tatattcacaggattggaagaactgcacgagcaggagcagaaggaaaagcgataaatatc
ctttccaaaaatgaccatgctaatttcatgagtgtgctgaaagacaatgatgtggatatt
aaggaacaggcactacctgctctgaagaagattgtaattgaaagaccggaaataagattg
ccaaagccggtaaataggatgaacaatccctccagaaaaggtcataaacccaggcacaaa
aactgttag
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