Methanosarcina vacuolata: MSVAZ_1358
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Entry
MSVAZ_1358 CDS
T03815
Name
(GenBank) Phosphoesterase
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mvc
Methanosarcina vacuolata
Pathway
mvc03410
Base excision repair
mvc03430
Mismatch repair
mvc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MSVAZ_1358
03430 Mismatch repair
MSVAZ_1358
03440 Homologous recombination
MSVAZ_1358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvc03400
]
MSVAZ_1358
DNA repair and recombination proteins [BR:
mvc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MSVAZ_1358
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MSVAZ_1358
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MSVAZ_1358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
AKB43627
UniProt:
A0A0E3Q2X4
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All DBs
Position
1716714..1717691
Genome browser
AA seq
325 aa
AA seq
DB search
MKELENRIKAKTLVLTHGDSDGICSGAIAKTAYPDAYVYFTNPSNLLEKLRLIQDVKTLI
ICDIAIDERNCSELHTALREFAETSDLYYIDHHPLPKSCEKESWFYHDIEACSSELTYRV
FEDRLDRDMRRVAIYGAIGDFCDNTPCLKNWVKDWDKRNLYFQAGTLTQAILYKGRDYEF
KRKLLEPLSKDIIPSNIPELLKLAREAAINEEKLRLFVKYNVEVLRNSAYIVNTNNSISK
AAIYAASYGRREVGIAAEYRERKVAYDLSIRSRGEVDVNNILRSVAPRFGGSGGGHPLAA
GAQIPEDSLNAFLRAFDKELGEAHR
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaactcgagaaccggatcaaagcgaaaactctagtccttactcacggagattcg
gatgggatatgctcaggtgcgattgcaaaaaccgcttatccggatgcgtatgtatatttt
acaaacccgtccaaccttcttgaaaaattaaggcttatacaagatgtgaaaacccttatt
atttgcgatattgcaatcgatgaaaggaactgttctgaacttcacacagcactccgagaa
tttgcggagacgtccgacctttactatattgaccaccatcctctccctaaaagctgtgaa
aaagagagctggttctaccatgatatcgaagcctgttcctcagagttgacctacagggtc
tttgaggaccgcctggacagggatatgcggagggtagcaatctacggagcgattggggat
ttctgcgacaacactccatgtttaaagaactgggtcaaagattgggataaaaggaatctt
tatttccaggctggaaccctgacccaggccatcctatataaaggaagggattacgaattc
aagagaaaacttcttgagcccctctcaaaggacataatcccttcaaatattccagaactg
cttaagcttgccagagaagcagcaattaacgaggagaaattaaggctttttgttaaatat
aatgtggaagtcctgagaaacagcgcgtatattgtaaatacaaataactccatttcaaag
gcagcgatatacgcagcctcttacggcaggcgggaagtcgggattgcagccgaataccgt
gaaagaaaggtagcttatgaccttagtatccgatccaggggagaggtagacgtaaacaat
attctccgttcagtcgcaccaagattcggaggaagcggcggtggacatccacttgcggca
ggcgctcaaattcccgaagattcccttaacgcattcctcagggcttttgataaggaacta
ggggaagcacataggtaa
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