Methanosarcina vacuolata: MSVAZ_1713
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Entry
MSVAZ_1713 CDS
T03815
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mvc
Methanosarcina vacuolata
Brite
KEGG Orthology (KO) [BR:
mvc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mvc03032
]
MSVAZ_1713
03400 DNA repair and recombination proteins [BR:
mvc03400
]
MSVAZ_1713
Enzymes [BR:
mvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MSVAZ_1713
DNA replication proteins [BR:
mvc03032
]
Prokaryotic type
DNA Topoisomerases
MSVAZ_1713
DNA repair and recombination proteins [BR:
mvc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MSVAZ_1713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
HHH_5
Cdd1
DUF4332
TfoX_C
DNA_pol_lambd_f
SAM_BAF
IMS_HHH_1
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
AKB43982
UniProt:
A0A0E3Q5D2
LinkDB
All DBs
Position
2175645..2177978
Genome browser
AA seq
777 aa
AA seq
DB search
MHLIVTEKNIAARRIAAILAPKNPKKDRVSGVDVYRYEIVSDGEKQETVVVGLSGHIVGI
DFPKEYNNWQKVEAKTLIDADIITTPINRKIVTALRSLGKEASRVTIATDYDREGELIGV
EALNIIKKVNQDVPFDRVRYSAITPKAIDAAFSNATDVDFNLADAGHSRQVIDLVWGAAL
TRYISLAAGRLGKMFLSVGRVQSPTLSLIVDREKERNVFVPIPYWEIYAELQNTDGETFS
TQHSTRRFLDKKEATGVFKKLGKKAELKEIEKGKKTDQPPTPFNTTGFISAANSIGLSPA
NAMRIAESLYTNGYISYPRTDNTVYPETLDLRAQIEIFKEGPFKEYADALLEKAELTPTR
GKKETTDHPPIFPASLAKESDLKEEEWKVYELVVRRFFATFAGPSEWETMRLRLDINGEE
FRANGARLVEPGWRWYYPYNAPEDRLFPELHEGESLKVIKTEMLDKETQPPGRYGQGRLI
NIMEELGLGTKATRHEIISKLYSRAYIHGNPVQPTNTSFAVMDTLEKYSPTITKPDMTKL
LEENMDLIAEGKIKESAVLEESRDILKQVFSELDKNREKIVESLQAGLREDKIIGICSGC
GNELIIRRSKRGGRFIGCNNYPNCTFSLPLPRSGQIIVTDKVCEAHGLHHIRIINSGKRP
WDLGCPQCNFIEWQKTQQEEQAKQPKKEKPKSIKDLEGVGKAIAGKLEEAGITSVEALAE
ADPVELAKAIKTSVKRVKSWQVSCNGTVTVESNSTDEGSSTVKGSSTIKGSSTVEDA
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttattgtaacggaaaaaaatatagcagcaaggaggatagctgcgattctggct
ccaaaaaacccaaagaaagatagagtcagcggagtagacgtataccggtatgagattgtg
tccgatggagagaagcaggagactgtagttgtagggctgtcgggccatatcgtggggatc
gattttcccaaggagtacaataactggcagaaagtggaggctaaaactcttatcgacgcc
gacatcataacgactcctatcaaccggaagatcgtaactgcccttagaagcctgggaaaa
gaggcaagcagggttacgattgctactgactatgatcgagaaggagaacttataggagtc
gaagccctcaatattataaaaaaggtgaatcaggatgttccttttgaccgggtgcgctac
agtgcaataaccccaaaggcgatagacgctgcattttcaaatgcaacagatgttgatttt
aatctcgcagacgccggccattccagacaggttattgacctcgtctggggtgcagccctt
acccgttatatttctcttgctgcaggcaggctagggaagatgttcctttccgtaggtagg
gtacagtcgccaactctttctcttattgttgacagggaaaaagaaaggaatgtttttgtc
ccaattccttactgggaaatctatgccgaacttcaaaatacagacggagaaaccttctca
actcagcactcaacccgccgtttcctggataaaaaggaggcaacaggagtcttcaaaaaa
ctgggaaaaaaggccgaattaaaggaaattgaaaaagggaaaaaaaccgatcagcccccg
actccgtttaataccacaggtttcataagcgcagcaaactcaatcgggctcagccccgca
aacgcgatgcgtatagctgaatctctatatactaatggttatatttcgtaccccagaact
gacaatacggtttatcccgagacccttgacctgagggcgcagattgagattttcaaagaa
ggcccctttaaagaatacgcagacgccctgcttgagaaagccgaactcacccctacgcga
ggaaaaaaggaaactaccgaccatccacctatttttccggcttcccttgcaaaagagtcc
gacttaaaagaggaagaatggaaagtctacgaacttgtagtcaggcgcttttttgcgacc
tttgccgggccaagcgagtgggaaactatgcgcctgaggctcgacatcaacggagaagag
ttcagggcaaacggggcaaggcttgttgaaccgggctggagatggtactatccttacaat
gcgcctgaagacaggttgttccctgaacttcatgaaggcgagtccctgaaagtgattaaa
acagagatgctggataaagaaacccagcctccaggccgttacggacagggaagacttatc
aatattatggaagagctcgggctcggaacaaaagcaacgcgacatgagataatcagcaag
ctttattccagggcctacatccacggaaatcctgtgcagcctacgaatacctcttttgca
gtaatggatactcttgagaagtattctcctactatcacaaaaccggacatgacaaagctg
cttgaagaaaacatggacctgattgctgaaggcaagatcaaagagtctgccgttcttgaa
gaatcgcgggatatattaaagcaggtcttctctgaactcgataaaaaccgggaaaaaatc
gtggaatctctccaggcaggcctcagggaagacaaaatcataggcatttgctcaggctgc
ggaaacgaacttattatccggcgttcgaaaaggggaggccgttttataggctgcaacaat
tatcctaactgtaccttttccctccctctgcccagaagcggacagattatagttactgac
aaggtctgtgaagctcacggcctgcaccatatccgtataattaattcaggaaaacggccc
tgggaccttggctgccctcagtgtaatttcatagaatggcagaaaacccagcaggaagaa
caggccaagcagcccaaaaaagaaaagcccaaatcaattaaggacctggaaggcgttgga
aaagccatagcaggaaaactggaagaagccggtattacaagcgtagaagctctggcagaa
gccgaccctgtagagcttgcaaaagcaataaagaccagtgtaaagagagtaaaaagctgg
caggtctcatgcaacggcacagttacagtagaaagcaatagcacagatgagggcagtagt
acagttaagggcagtagtacaattaaaggcagtagtacagttgaagacgcatga
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